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The map label for this gene is rpoZ

Identifier: 158335419

GI number: 158335419

Start: 2266714

End: 2266944

Strand: Direct

Name: rpoZ

Synonym: AM1_2264

Alternate gene names: 158335419

Gene position: 2266714-2266944 (Clockwise)

Preceding gene: 158335417

Following gene: 158335420

Centisome position: 34.85

GC content: 49.35

Gene sequence:

>231_bases
ATGTCTAAGCGCCCCACCATCGACACCACGCATATTATGCGGCGAGCTGAAGAATTGATTAGCGCTTCTTCCAATCGCTA
CCGCATTACTGTGCAAGTTGCGAACCGGGCCAAAAAGCGTCGTCGCCGCGAAAATTTAGAAGACTTTGAAGATGCTGGCA
TGAAGTCCGTGATGCAAGCCATTATCGAAATGTCTGATGAACTGACGCAACCGGAGATTATTGGCGAGTGA

Upstream 100 bases:

>100_bases
CAATCAATCAGCCCCCGTACCCGCAGAGTTTCTAGGCGGCTTGTCTCGGGACGAGAGCATTGTTGCTAGACTAGTAAGCA
GTCCATTCTCGAGAAACTTT

Downstream 100 bases:

>100_bases
ACCCTAACCTCACTCTGATTCAACGGTCCAAGCGGGCACTTCTCTGTGCCTCCTTGGTCGTCAGCGGATGGATGCTGGCC
CAACCAGCGGTGGCCCAGCG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSKRPTIDTTHIMRRAEELISASSNRYRITVQVANRAKKRRRRENLEDFEDAGMKSVMQAIIEMSDELTQPEIIGE

Sequences:

>Translated_76_residues
MSKRPTIDTTHIMRRAEELISASSNRYRITVQVANRAKKRRRRENLEDFEDAGMKSVMQAIIEMSDELTQPEIIGE
>Mature_75_residues
SKRPTIDTTHIMRRAEELISASSNRYRITVQVANRAKKRRRRENLEDFEDAGMKSVMQAIIEMSDELTQPEIIGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_ACAM1 (B0C118)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001516591.1
- GeneID:   5681078
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_2264
- HOGENOM:   HBG284825
- OMA:   RYRITVQ
- ProtClustDB:   PRK00392
- BioCyc:   AMAR329726:AM1_2264-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8850; Mature: 8719

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRPTIDTTHIMRRAEELISASSNRYRITVQVANRAKKRRRRENLEDFEDAGMKSVMQA
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IIEMSDELTQPEIIGE
HHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SKRPTIDTTHIMRRAEELISASSNRYRITVQVANRAKKRRRRENLEDFEDAGMKSVMQA
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IIEMSDELTQPEIIGE
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA