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The map label for this gene is psbA

Identifier: 158335322

GI number: 158335322

Start: 2166714

End: 2167796

Strand: Reverse

Name: psbA

Synonym: AM1_2166

Alternate gene names: 158335322

Gene position: 2167796-2166714 (Counterclockwise)

Preceding gene: 158335323

Following gene: 158335310

Centisome position: 33.33

GC content: 50.69

Gene sequence:

>1083_bases
ATGACAACAGTCTTGCAAAGACGCGAAAGCGCCAGCGCATGGGAAAGATTCTGTAGCTTCATCACCAGCACCAACAACCG
TTTATACATCGGTTGGTTCGGCGTATTGATGATTCCTACACTTCTCACCGCTGTAACCTGTTTCGTAATCGCCTTCATCG
GCGCCCCTCCCGTCGACATCGATGGAATCCGTGAGCCCGTTGCTGGTTCACTACTTTATGGCAACAACATCATCACTGGT
GCCGTTGTTCCTTCATCCAACGCCATTGGCCTTCACCTGTATCCCATCTGGGAAGCAGCTTCTCTTGATGAGTGGTTGTA
CAACGGTGGCCCTTACCAGCTAATCATTTTCCATTACATGATTGGTTGTATTTGCTACCTCGGTCGTCAGTGGGAGTACA
GCTACCGTCTAGGGATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCTTTGGCCGCTACCTACTCTGTCTTCTTGATC
TATCCTCTAGGTCAGGGCAGCTTCTCCGACGGAATGCCTCTAGGCATCAGCGGAACCTTCAACTTCATGTTCGTGTTCCA
AGCTGAGCACAACATCCTCATGCACCCCTTCCACATGTTTGGAGTTGCTGGTGTACTGGGTGGTTCCTTATTCGCCGCCA
TGCACGGTTCCTTGGTTAGCTCCACTCTAGTTCGTGAGACCACCGAAGGTGAGTCCGCCAACTACGGTTACAAGTTCGGC
CAAGAGGAAGAGACCTACAACATCGTTGCAGCCCACGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCTTTCAGCAA
CAGCCGTTCCTTGCACTTCTTCTTGGGTGCATGGCCCGTTGTCTGCATCTGGTTGACTGCAATGGGCATCAGCACCATGG
CCTTCAACTTGAATGGTTTCAACTTCAACCACTCCATCGTTGATTCACAAGGTAACGTTGTGAACACATGGGCTGACGTA
CTAAACCGCGCCAACTTGGGTTTCGAAGTTATGCACGAGCGTAACGCTCATAACTTCCCCTTAGACTTGGCTGCTGGTGA
GTCTGCTCCTGTTGCTCTTACTGCTCCTGTCATCAACGGTTAA

Upstream 100 bases:

>100_bases
ACATTTTTAAATAGGGTAGTTACAATCAAGTGCAGAAGTTAACTTAGATTTATCTAACTGCTTCTGTTTAATACAAATTC
ATACTTCAGCAATCATAACC

Downstream 100 bases:

>100_bases
TTCCTGAACTGATTCAGTTCTGAATTAAAGGTTTAACCTCGGTTAAACTGAGAACCTAATTTGAATAAAGCGCTCCTCCG
GGGGCGCTTTATTTTTGTGT

Product: photosystem II D1 protein PsbA

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 2; Photosystem II protein D1 2

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDIDGIREPVAGSLLYGNNIITG
AVVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYMIGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLI
YPLGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMFGVAGVLGGSLFAAMHGSLVSSTLVRETTEGESANYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFSNSRSLHFFLGAWPVVCIWLTAMGISTMAFNLNGFNFNHSIVDSQGNVVNTWADV
LNRANLGFEVMHERNAHNFPLDLAAGESAPVALTAPVING

Sequences:

>Translated_360_residues
MTTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDIDGIREPVAGSLLYGNNIITG
AVVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYMIGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLI
YPLGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMFGVAGVLGGSLFAAMHGSLVSSTLVRETTEGESANYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFSNSRSLHFFLGAWPVVCIWLTAMGISTMAFNLNGFNFNHSIVDSQGNVVNTWADV
LNRANLGFEVMHERNAHNFPLDLAAGESAPVALTAPVING
>Mature_359_residues
TTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDIDGIREPVAGSLLYGNNIITGA
VVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYMIGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLIY
PLGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMFGVAGVLGGSLFAAMHGSLVSSTLVRETTEGESANYGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFSNSRSLHFFLGAWPVVCIWLTAMGISTMAFNLNGFNFNHSIVDSQGNVVNTWADVL
NRANLGFEVMHERNAHNFPLDLAAGESAPVALTAPVING

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA2_ACAM1 (A5A8K9)

Other databases:

- EMBL:   CP000828
- EMBL:   CP000828
- EMBL:   AB303650
- EMBL:   AB303650
- RefSeq:   YP_001516494.1
- RefSeq:   YP_001517204.1
- ProteinModelPortal:   A5A8K9
- SMR:   A5A8K9
- GeneID:   5680980
- GeneID:   5681697
- GenomeReviews:   CP000828_GR
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_2166
- KEGG:   amr:AM1_2889
- HOGENOM:   HBG284766
- OMA:   GIWFTSM
- ProtClustDB:   CLSK892431
- BioCyc:   AMAR329726:AM1_2166-MONOMER
- BioCyc:   AMAR329726:AM1_2889-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39671; Mature: 39540

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf31c954)-; HASH(0xf912d18)-; HASH(0xf999854)-; HASH(0xf99ac74)-; HASH(0xf71211c)-;

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDI
CCCHHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGIREPVAGSLLYGNNIITGAVVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYM
CCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEHHHHHH
IGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLIYPLGQGSFSDGMPLGISGTF
HHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEECCCE
NFMFVFQAEHNILMHPFHMFGVAGVLGGSLFAAMHGSLVSSTLVRETTEGESANYGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFSNSRSLHFFLGAWPVVCIWLTAMGISTMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCEEEEEEECCC
NFNHSIVDSQGNVVNTWADVLNRANLGFEVMHERNAHNFPLDLAAGESAPVALTAPVING
CCCCEEECCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCCEEEECCCCCH
>Mature Secondary Structure 
TTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDI
CCHHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGIREPVAGSLLYGNNIITGAVVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYM
CCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEHHHHHH
IGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLIYPLGQGSFSDGMPLGISGTF
HHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEECCCE
NFMFVFQAEHNILMHPFHMFGVAGVLGGSLFAAMHGSLVSSTLVRETTEGESANYGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFSNSRSLHFFLGAWPVVCIWLTAMGISTMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCEEEEEEECCC
NFNHSIVDSQGNVVNTWADVLNRANLGFEVMHERNAHNFPLDLAAGESAPVALTAPVING
CCCCEEECCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCCEEEECCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA