| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is comEC [H]
Identifier: 158335299
GI number: 158335299
Start: 2134517
End: 2136790
Strand: Direct
Name: comEC [H]
Synonym: AM1_2142
Alternate gene names: 158335299
Gene position: 2134517-2136790 (Clockwise)
Preceding gene: 158335298
Following gene: 158335300
Centisome position: 32.82
GC content: 51.32
Gene sequence:
>2274_bases ATGCAGGCGTTGAATGGGGCCATTCTCTGCATCGCTTGGATAGTCGGCTTACTCTCCACGGCTCATCCTTATAGCTGGCT GGGGTTGATTGGCTTAGGGCTAGGACTGATGGGAATGCGAGTTATCAGTTTGCGAGTTCCCTGGCCTCTTTTGTACCCCT GGCGACGAGGCCCAAGAGTGGCCTTTTGGTTATTGGCTTTGGCATGTGCGCTGTTTGCTAGCCTATATTTCTCCGTCCGC ACCCCAACCCCAGGCTCAAGAGATATCAGTCGAATCGTCCCTGAAGTCTCGCGATCGCTAGTGACGGTTACAGGCAAAGT CGAAACCATGCCTCGCTTGACACGCAGTCAAACCGTTCAGTTTCAGCTTCAGGCGTTAAAACTAGAGGCAAAGCCAACTC AAAAAACGGTTCGTGGCTTACTTTATGTATCCTTACCTCCAAAGCAGGGACAAAAACTACATCCGGGGCAACGGGTAGAA GTGTCTGGCTATCTTTACAAACCTCGCCGTTCCGCTACCCCCCAAGGCTTTGATTTTGAAGATTATCTGACCCGCTCTGG TATTTTCGCAGGTTTGCGAGGTAAAACCGTTACGGTCAAGCAGTCTGGAGGCACTTGGGGTGGCTGGGCTGTGCGGCAGC GAATTGTGCGATCGCATGCCCGATTCCTGGGACCTGAAAAAGGTGCATTAGTCAGCGCTATGGTCTTAGGCCATCGTCGG GTCGATTTACCGTTCAACCTACGCAATCGCTTTGTCAAAGTTGGTTTAGCTCATACACTAGCCGCTTCAGGGTTCCATGT TTCCATCATTCTCGCGGGACTGCTAAAGGTCACAGGTCGCCTTTCGTCCCGAACTCAACTGATCAGTGGGCTGATCGGAC TCATCATTTTTATCTTCTTAAGCGGATTTGAGCCCTCGGTTTCCCGTGCGGTTTTAATGGGCATGGCAGGTTTGGCAGCC GTTACGGCCAACCGTAAGTTAAATCCAGTTGGCGTATTGCTGGTAGTGGCCGTTGGACTGCTCGTCATCCAGCCCCAATG GATCTGGGATTTAGGATTTCAACTCAGCTTTTTAGCGACATTGGGGCTGATCGTGACGGTGCCACCCTTAACCCAGAAAC TAGATTGGTTACCGCCTGCGATCTCATCCTTATTCGCAGTGCCCATTGCCGCTATGCTGTGGACCTTGCCCTTACAGCTC TATCAGTTTGGAATCGCCCCGATTTATTGTTTGCTGGCCAATATTTGCACAACGCCGCTGTTGATTCTGCTAACAGCAGG TGGATTTTGCAGCGGTATCGTAGCGGTAATGTGGCCTTTGGCAGGGGGGCTATTGGCTTGGCTGCTGGCGATACCTACCC AAGGGCTGATTTGGCTGGTCACTCAGATCAGCCTGTTACCGGGAGCCTCCTTAACCCTCGGGACCCTCTCCATTTGGCAA TTGGTACTGCTCTATGGGCTGCTGGTATCGGCATGGCTCTTACCCGTTTGGAAGCAACGTTTACCGCTATTGATAACCTT GGCCTTAGGCATCATCATCCTGCCCATTTGGCATTATCAAGTCTATCGCTTCCAAATCACGATTTTTGACCGAGCCACAC CACCGATGATGGTGATCCAGCAACCCGGATCGACACTGGTATTGAATAGTGGCGATCGCAACACCGCATCACAAACCCTC GTTCCTTTTTTGCAACGCCAGGGCATTGATCAAGTGGATCTGGCCTTAGCCACAGACTTACGATCTCGCTGGAGAGACGG ATGGCCCGCGTTACTCCAGCAGGTCTCCCTAAAGAAGTTGATTCCCATCTCTTTAACCAACAACACCGCACTACAAGAGC AACTTCTTGGATCTCAGGTCCAACCGGGAAAGCTACGTTTCCTTCAAGTCGGTGAGCAACTGGTTCAAGACCAAACTCAA ATTAGCGTCTTGCGTCACCAACCGACTCTGTTGCAGTTCACTATCAATCAACAAAACTGGCTGATGGTTTCGGGTCGGTA TCAAGGATTATTACCTTGGCTGCAAACGACCCAAGTCCCCTCGCCGCAAGTGCTATGGTGGTCCACAAAAGTTGATCTAG AAGCGATTCACCACTTGCAACCTCAAGTTCTTATTCTCACGTCTCGCAATATTGATGCCGAAAGCTTGAGCCAGTTAGAA CGCCGAATCTCCAAAGTTTATTGGACGCCCAGAGATGGGGCAGTGCAGTGGACTCGCGATCGCGGTTTTGAATCCACCTT CCCCCTTAGTGAAAATCCGGCTTCTCCCCTGTAG
Upstream 100 bases:
>100_bases AGACATCTGTGACTATCCCAAACTACGGCAACGGTTAGTTCGTAATGGTGAGGACCGTCACCTATATAACTGGGATGATC TTCAGCCATTTGAAATCTAA
Downstream 100 bases:
>100_bases AATAGGCGTTAGACTAAACCAAAATCACCAACCTGGAGAGGTGGCAGAGTGGTTGAATGCGGCAGACTCGAAATCTGTTT TAGGGTCAAACCTAACGGGG
Product: competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MQALNGAILCIAWIVGLLSTAHPYSWLGLIGLGLGLMGMRVISLRVPWPLLYPWRRGPRVAFWLLALACALFASLYFSVR TPTPGSRDISRIVPEVSRSLVTVTGKVETMPRLTRSQTVQFQLQALKLEAKPTQKTVRGLLYVSLPPKQGQKLHPGQRVE VSGYLYKPRRSATPQGFDFEDYLTRSGIFAGLRGKTVTVKQSGGTWGGWAVRQRIVRSHARFLGPEKGALVSAMVLGHRR VDLPFNLRNRFVKVGLAHTLAASGFHVSIILAGLLKVTGRLSSRTQLISGLIGLIIFIFLSGFEPSVSRAVLMGMAGLAA VTANRKLNPVGVLLVVAVGLLVIQPQWIWDLGFQLSFLATLGLIVTVPPLTQKLDWLPPAISSLFAVPIAAMLWTLPLQL YQFGIAPIYCLLANICTTPLLILLTAGGFCSGIVAVMWPLAGGLLAWLLAIPTQGLIWLVTQISLLPGASLTLGTLSIWQ LVLLYGLLVSAWLLPVWKQRLPLLITLALGIIILPIWHYQVYRFQITIFDRATPPMMVIQQPGSTLVLNSGDRNTASQTL VPFLQRQGIDQVDLALATDLRSRWRDGWPALLQQVSLKKLIPISLTNNTALQEQLLGSQVQPGKLRFLQVGEQLVQDQTQ ISVLRHQPTLLQFTINQQNWLMVSGRYQGLLPWLQTTQVPSPQVLWWSTKVDLEAIHHLQPQVLILTSRNIDAESLSQLE RRISKVYWTPRDGAVQWTRDRGFESTFPLSENPASPL
Sequences:
>Translated_757_residues MQALNGAILCIAWIVGLLSTAHPYSWLGLIGLGLGLMGMRVISLRVPWPLLYPWRRGPRVAFWLLALACALFASLYFSVR TPTPGSRDISRIVPEVSRSLVTVTGKVETMPRLTRSQTVQFQLQALKLEAKPTQKTVRGLLYVSLPPKQGQKLHPGQRVE VSGYLYKPRRSATPQGFDFEDYLTRSGIFAGLRGKTVTVKQSGGTWGGWAVRQRIVRSHARFLGPEKGALVSAMVLGHRR VDLPFNLRNRFVKVGLAHTLAASGFHVSIILAGLLKVTGRLSSRTQLISGLIGLIIFIFLSGFEPSVSRAVLMGMAGLAA VTANRKLNPVGVLLVVAVGLLVIQPQWIWDLGFQLSFLATLGLIVTVPPLTQKLDWLPPAISSLFAVPIAAMLWTLPLQL YQFGIAPIYCLLANICTTPLLILLTAGGFCSGIVAVMWPLAGGLLAWLLAIPTQGLIWLVTQISLLPGASLTLGTLSIWQ LVLLYGLLVSAWLLPVWKQRLPLLITLALGIIILPIWHYQVYRFQITIFDRATPPMMVIQQPGSTLVLNSGDRNTASQTL VPFLQRQGIDQVDLALATDLRSRWRDGWPALLQQVSLKKLIPISLTNNTALQEQLLGSQVQPGKLRFLQVGEQLVQDQTQ ISVLRHQPTLLQFTINQQNWLMVSGRYQGLLPWLQTTQVPSPQVLWWSTKVDLEAIHHLQPQVLILTSRNIDAESLSQLE RRISKVYWTPRDGAVQWTRDRGFESTFPLSENPASPL >Mature_757_residues MQALNGAILCIAWIVGLLSTAHPYSWLGLIGLGLGLMGMRVISLRVPWPLLYPWRRGPRVAFWLLALACALFASLYFSVR TPTPGSRDISRIVPEVSRSLVTVTGKVETMPRLTRSQTVQFQLQALKLEAKPTQKTVRGLLYVSLPPKQGQKLHPGQRVE VSGYLYKPRRSATPQGFDFEDYLTRSGIFAGLRGKTVTVKQSGGTWGGWAVRQRIVRSHARFLGPEKGALVSAMVLGHRR VDLPFNLRNRFVKVGLAHTLAASGFHVSIILAGLLKVTGRLSSRTQLISGLIGLIIFIFLSGFEPSVSRAVLMGMAGLAA VTANRKLNPVGVLLVVAVGLLVIQPQWIWDLGFQLSFLATLGLIVTVPPLTQKLDWLPPAISSLFAVPIAAMLWTLPLQL YQFGIAPIYCLLANICTTPLLILLTAGGFCSGIVAVMWPLAGGLLAWLLAIPTQGLIWLVTQISLLPGASLTLGTLSIWQ LVLLYGLLVSAWLLPVWKQRLPLLITLALGIIILPIWHYQVYRFQITIFDRATPPMMVIQQPGSTLVLNSGDRNTASQTL VPFLQRQGIDQVDLALATDLRSRWRDGWPALLQQVSLKKLIPISLTNNTALQEQLLGSQVQPGKLRFLQVGEQLVQDQTQ ISVLRHQPTLLQFTINQQNWLMVSGRYQGLLPWLQTTQVPSPQVLWWSTKVDLEAIHHLQPQVLILTSRNIDAESLSQLE RRISKVYWTPRDGAVQWTRDRGFESTFPLSENPASPL
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 83795; Mature: 83795
Theoretical pI: Translated: 11.17; Mature: 11.17
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQALNGAILCIAWIVGLLSTAHPYSWLGLIGLGLGLMGMRVISLRVPWPLLYPWRRGPRV CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCEECCCCCCCHH AFWLLALACALFASLYFSVRTPTPGSRDISRIVPEVSRSLVTVTGKVETMPRLTRSQTVQ HHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHE FQLQALKLEAKPTQKTVRGLLYVSLPPKQGQKLHPGQRVEVSGYLYKPRRSATPQGFDFE EEEEEEEECCCCHHHHHCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHH DYLTRSGIFAGLRGKTVTVKQSGGTWGGWAVRQRIVRSHARFLGPEKGALVSAMVLGHRR HHHHHCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEE VDLPFNLRNRFVKVGLAHTLAASGFHVSIILAGLLKVTGRLSSRTQLISGLIGLIIFIFL ECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH SGFEPSVSRAVLMGMAGLAAVTANRKLNPVGVLLVVAVGLLVIQPQWIWDLGFQLSFLAT CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHH LGLIVTVPPLTQKLDWLPPAISSLFAVPIAAMLWTLPLQLYQFGIAPIYCLLANICTTPL HHHHEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LILLTAGGFCSGIVAVMWPLAGGLLAWLLAIPTQGLIWLVTQISLLPGASLTLGTLSIWQ HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH LVLLYGLLVSAWLLPVWKQRLPLLITLALGIIILPIWHYQVYRFQITIFDRATPPMMVIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCEEEEE QPGSTLVLNSGDRNTASQTLVPFLQRQGIDQVDLALATDLRSRWRDGWPALLQQVSLKKL CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHE IPISLTNNTALQEQLLGSQVQPGKLRFLQVGEQLVQDQTQISVLRHQPTLLQFTINQQNW EEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCE LMVSGRYQGLLPWLQTTQVPSPQVLWWSTKVDLEAIHHLQPQVLILTSRNIDAESLSQLE EEEECCCCCCCHHHHHCCCCCCCEEEEECCCCHHHHHCCCCEEEEEEECCCCHHHHHHHH RRISKVYWTPRDGAVQWTRDRGFESTFPLSENPASPL HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQALNGAILCIAWIVGLLSTAHPYSWLGLIGLGLGLMGMRVISLRVPWPLLYPWRRGPRV CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCEECCCCCCCHH AFWLLALACALFASLYFSVRTPTPGSRDISRIVPEVSRSLVTVTGKVETMPRLTRSQTVQ HHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHE FQLQALKLEAKPTQKTVRGLLYVSLPPKQGQKLHPGQRVEVSGYLYKPRRSATPQGFDFE EEEEEEEECCCCHHHHHCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHH DYLTRSGIFAGLRGKTVTVKQSGGTWGGWAVRQRIVRSHARFLGPEKGALVSAMVLGHRR HHHHHCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEE VDLPFNLRNRFVKVGLAHTLAASGFHVSIILAGLLKVTGRLSSRTQLISGLIGLIIFIFL ECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH SGFEPSVSRAVLMGMAGLAAVTANRKLNPVGVLLVVAVGLLVIQPQWIWDLGFQLSFLAT CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHH LGLIVTVPPLTQKLDWLPPAISSLFAVPIAAMLWTLPLQLYQFGIAPIYCLLANICTTPL HHHHEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LILLTAGGFCSGIVAVMWPLAGGLLAWLLAIPTQGLIWLVTQISLLPGASLTLGTLSIWQ HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH LVLLYGLLVSAWLLPVWKQRLPLLITLALGIIILPIWHYQVYRFQITIFDRATPPMMVIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCEEEEE QPGSTLVLNSGDRNTASQTLVPFLQRQGIDQVDLALATDLRSRWRDGWPALLQQVSLKKL CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHE IPISLTNNTALQEQLLGSQVQPGKLRFLQVGEQLVQDQTQISVLRHQPTLLQFTINQQNW EEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCE LMVSGRYQGLLPWLQTTQVPSPQVLWWSTKVDLEAIHHLQPQVLILTSRNIDAESLSQLE EEEECCCCCCCHHHHHCCCCCCCEEEEECCCCHHHHHCCCCEEEEEEECCCCHHHHHHHH RRISKVYWTPRDGAVQWTRDRGFESTFPLSENPASPL HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]