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The map label for this gene is ctpA [H]

Identifier: 158335240

GI number: 158335240

Start: 2074635

End: 2075912

Strand: Reverse

Name: ctpA [H]

Synonym: AM1_2083

Alternate gene names: 158335240

Gene position: 2075912-2074635 (Counterclockwise)

Preceding gene: 158335241

Following gene: 158335239

Centisome position: 31.92

GC content: 49.3

Gene sequence:

>1278_bases
ATGAAGACTGGTTTTGAAAAATTGAAGCTTTATAGAAGCCATCTTCTAAGCTTTTTTTTCGCGGCTGGGCTGGCATTGTG
GTTGGCTCAGGGGTCGATGTCCTCTGTTTCTTCTCAACAGCCAGCCTTGCTGGATGCGGTTTGGAACACCGTCAATGAAA
ATTTTTATGATCCGGAATTCAATGGTTTAGACTGGGCAGCCTTGAAATCGCAATATGAGTCCCAGGTAGCCAAGGCATCA
TCTCGGGCAGAAAAAGCTGAGGCGATCAACGAGATGCTGGATCGGCTGCAGACCTCTCATACTCACCTGTTTACCGTGGA
TGAACCTGCTTACTATCAGGTACTGGGTATTTTTTATCCCCGCATTAAAGAATTACGCACTCAGCTCAAATCCACGTTTC
CTGAGGGAAAGGTTCAGTACGAAGGCATTGGTATTGTCACCCAGGCGATTCAAGACAAAACTTTTATTAAAACTATCTTT
GAAGGCAGTCCAGCTGCCAAGGCAGGTCTCAAAGTGGGAGACCAAATCGTGAATGTGGCAGGTCAACCTTTTCAGGCGAT
TCAGTCGTTTAAGGGCAAAGCAGACCAACCCATCAAGGTGCGAATTCAAAGAACGGCAGACCCTAACGATCAACAAACCA
TCACAGTAACGCCGAAGCGCTTCGATTGCACCCAGATGTTTGTCGAAGCCATCGCTAATAGTGTGCAGGTAATTGAAACG
GATGGTCAACGCATTGGCTATATCCATGTTTGGTCCTTGGCTGGAGACCAGCATCAGCAAGAGCTAGAAGATGAAGTGAT
TTATGGTCGTTTGAAGAATGCCGATGCCCTTGTTCTTGATTTAAGAGATGGTTGGGGCGGAGATCCGATGACGGCACTTC
ATCTGTTCACGGCTAGAGGGCCCAGTTTGACCAGTATTAAAAGGCATGGGGCCACCTCGACCTACCAGGGACAGTGGGAT
AAGCCTGTCGTGATGCTCGTAAATGAAGGCAGTCGCAGCGCCAAGGAAATTTTGGCCTATGGCTTTCAGCAATATGAGAT
TGGCCCCGTTGTCGGGAGTCCCACGGCGGGGGCAGTGGTGGCTGGACGTCCCTATCTGATGCCAGATCAAAGTTTGCTAT
ACGTTGCAGTGAGTGATGTGTATATCGATAAAACGGTTCGCTTAGAGGGGGTAGGCGTGACGCCAGATGTTGTCGTGCCC
TTCCCTATCCCCTATGCCCAAGGTCAAGATCCCCAGAAAGACCGTGCGATCGCAATGGCGAGACAGGCCATCCAGTAG

Upstream 100 bases:

>100_bases
AATGCCTGGGATAGTGGGGAACTCTAAATCCGGCTTACACCAGAATGGCGATCAATAGCCATCTTGGCAATGCAGCCCAT
TGTAGACGAGCCCCATCATC

Downstream 100 bases:

>100_bases
TCCTGCCACAATTGTTCACTCACATTGGTCGGTACTCTGAAATCATCATGCCTGGGCTATCCAAGCCTCTGTATCCAAGT
GTTCAGGTGTATCTGAGAAC

Product: peptidase S41B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MKTGFEKLKLYRSHLLSFFFAAGLALWLAQGSMSSVSSQQPALLDAVWNTVNENFYDPEFNGLDWAALKSQYESQVAKAS
SRAEKAEAINEMLDRLQTSHTHLFTVDEPAYYQVLGIFYPRIKELRTQLKSTFPEGKVQYEGIGIVTQAIQDKTFIKTIF
EGSPAAKAGLKVGDQIVNVAGQPFQAIQSFKGKADQPIKVRIQRTADPNDQQTITVTPKRFDCTQMFVEAIANSVQVIET
DGQRIGYIHVWSLAGDQHQQELEDEVIYGRLKNADALVLDLRDGWGGDPMTALHLFTARGPSLTSIKRHGATSTYQGQWD
KPVVMLVNEGSRSAKEILAYGFQQYEIGPVVGSPTAGAVVAGRPYLMPDQSLLYVAVSDVYIDKTVRLEGVGVTPDVVVP
FPIPYAQGQDPQKDRAIAMARQAIQ

Sequences:

>Translated_425_residues
MKTGFEKLKLYRSHLLSFFFAAGLALWLAQGSMSSVSSQQPALLDAVWNTVNENFYDPEFNGLDWAALKSQYESQVAKAS
SRAEKAEAINEMLDRLQTSHTHLFTVDEPAYYQVLGIFYPRIKELRTQLKSTFPEGKVQYEGIGIVTQAIQDKTFIKTIF
EGSPAAKAGLKVGDQIVNVAGQPFQAIQSFKGKADQPIKVRIQRTADPNDQQTITVTPKRFDCTQMFVEAIANSVQVIET
DGQRIGYIHVWSLAGDQHQQELEDEVIYGRLKNADALVLDLRDGWGGDPMTALHLFTARGPSLTSIKRHGATSTYQGQWD
KPVVMLVNEGSRSAKEILAYGFQQYEIGPVVGSPTAGAVVAGRPYLMPDQSLLYVAVSDVYIDKTVRLEGVGVTPDVVVP
FPIPYAQGQDPQKDRAIAMARQAIQ
>Mature_425_residues
MKTGFEKLKLYRSHLLSFFFAAGLALWLAQGSMSSVSSQQPALLDAVWNTVNENFYDPEFNGLDWAALKSQYESQVAKAS
SRAEKAEAINEMLDRLQTSHTHLFTVDEPAYYQVLGIFYPRIKELRTQLKSTFPEGKVQYEGIGIVTQAIQDKTFIKTIF
EGSPAAKAGLKVGDQIVNVAGQPFQAIQSFKGKADQPIKVRIQRTADPNDQQTITVTPKRFDCTQMFVEAIANSVQVIET
DGQRIGYIHVWSLAGDQHQQELEDEVIYGRLKNADALVLDLRDGWGGDPMTALHLFTARGPSLTSIKRHGATSTYQGQWD
KPVVMLVNEGSRSAKEILAYGFQQYEIGPVVGSPTAGAVVAGRPYLMPDQSLLYVAVSDVYIDKTVRLEGVGVTPDVVVP
FPIPYAQGQDPQKDRAIAMARQAIQ

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=306, Percent_Identity=29.0849673202614, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46995; Mature: 46995

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGFEKLKLYRSHLLSFFFAAGLALWLAQGSMSSVSSQQPALLDAVWNTVNENFYDPEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCC
NGLDWAALKSQYESQVAKASSRAEKAEAINEMLDRLQTSHTHLFTVDEPAYYQVLGIFYP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
RIKELRTQLKSTFPEGKVQYEGIGIVTQAIQDKTFIKTIFEGSPAAKAGLKVGDQIVNVA
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
GQPFQAIQSFKGKADQPIKVRIQRTADPNDQQTITVTPKRFDCTQMFVEAIANSVQVIET
CCCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEC
DGQRIGYIHVWSLAGDQHQQELEDEVIYGRLKNADALVLDLRDGWGGDPMTALHLFTARG
CCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHEEEEEECCC
PSLTSIKRHGATSTYQGQWDKPVVMLVNEGSRSAKEILAYGFQQYEIGPVVGSPTAGAVV
CCHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCHHEEECCCCCCCCCCEEE
AGRPYLMPDQSLLYVAVSDVYIDKTVRLEGVGVTPDVVVPFPIPYAQGQDPQKDRAIAMA
CCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHH
RQAIQ
HHHCC
>Mature Secondary Structure
MKTGFEKLKLYRSHLLSFFFAAGLALWLAQGSMSSVSSQQPALLDAVWNTVNENFYDPEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCC
NGLDWAALKSQYESQVAKASSRAEKAEAINEMLDRLQTSHTHLFTVDEPAYYQVLGIFYP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
RIKELRTQLKSTFPEGKVQYEGIGIVTQAIQDKTFIKTIFEGSPAAKAGLKVGDQIVNVA
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
GQPFQAIQSFKGKADQPIKVRIQRTADPNDQQTITVTPKRFDCTQMFVEAIANSVQVIET
CCCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEC
DGQRIGYIHVWSLAGDQHQQELEDEVIYGRLKNADALVLDLRDGWGGDPMTALHLFTARG
CCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHEEEEEECCC
PSLTSIKRHGATSTYQGQWDKPVVMLVNEGSRSAKEILAYGFQQYEIGPVVGSPTAGAVV
CCHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCHHEEECCCCCCCCCCEEE
AGRPYLMPDQSLLYVAVSDVYIDKTVRLEGVGVTPDVVVPFPIPYAQGQDPQKDRAIAMA
CCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHH
RQAIQ
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]