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The map label for this gene is ubiD [C]

Identifier: 158335192

GI number: 158335192

Start: 2023868

End: 2025379

Strand: Direct

Name: ubiD [C]

Synonym: AM1_2036

Alternate gene names: 158335192

Gene position: 2023868-2025379 (Clockwise)

Preceding gene: 158335186

Following gene: 158335195

Centisome position: 31.12

GC content: 51.46

Gene sequence:

>1512_bases
ATGGCTAGAGACCTGAGAAAATTTATCCAACGCCTCGAAGAGCGAGGCCAACTCAAACGCATCCAAGCCTTGGTAGATCC
CAAACTAGAAATTGCTGAAATTTCAGATCGGATGTTACAGCAGGGCGGGCCAGGACTGCTATTTGAAAACGTGAAAGGCT
CGGACTATCCCGTGGCGGTGAATTTATTGGGCACCGTGGAGCGCACTTGCTGGGCGATGAATATGGAGTCCCAGTCCGAG
CTGGAGGATCTGGGTAAGAAGCTAGCAATGCTGCAGCAGCCCAAGCCCCCCAAGAAACTGAACCAATTTATCGACTTTGG
CAAAGTTCTGTTTGATGTAGTCAAGGCCAAACCCCAGCGAGATTTGCTGCCCCCATGCCATCAGGTAGTGCTCAAGGATG
AGCAGGTGGATTTGAATAAAATCCCGATGATTCAGCCCTATATCGGGGATGGCGGCAAGGTGGTGACCTTTGGCTTGGTG
ATTACCAAAGACTGTGAAACGGGGACGCCCAATGTCGGGGTATATCGCCTGCAGTTGCAGTCGAAGAACACCATGACGGT
GCAGTGGCTATCGGTGCGGGGCGGAGCACGGCATTTACGCAAGGCGGCAGAGCAAGGGAAAAAACTGGAAATTGCGATCG
CAGTCGGTATTGACCCCCTGATTATTATGGCCGCAGCCACGCCGATCCCCGTCGATCTTTCAGAATGGCTGTTTGCCGGA
CTCTATGGCGGCAGTGGCGTTCACCTGGCCAAGTGCAAAACCGTCGATTTAGAAGTACCTGCCCAAAGTGAGTTTGTTCT
AGAAGGTACGATTACCCCCGGTGAAACAGGCGTAGATGGTCCCTTTGGCGATCATATGGGCTACTACGGCGGCATCAATG
AAGCCGCGCCGCTAATTCGGTTTCACTGCATGACCCATCGTAAAAATCCCATCTATCTCACTACCTTTAGCGGACGTCCC
CCCAAAGAAGAAGCAATGATGGCCATTGCTCTCAATCGGATTTACACACCGATTTTGCGGCAGCAGGTCTCAGAAATTGT
GGACTTCTTTTTACCCATGGAAGCCCTGAGCTATAAAGCAGCGGTTATTTCCATTGATAAAGCCTATCCAGGGCAGGCTC
GTCGGGCAGCTTTAGCATTTTGGAGCGCCCTGCCCCAATTTACCTATACCAAGTTTGTAATTGTCGTCGATAAGGATGTG
AATATCCGCGATCCGCGCCAGGTAGTATGGGCAGTTTCTTCTAAGGTCGATCCGGTCCGAGATGTGTTTATCTTGCCGGA
AACCCCCTTTGATACCCTCGATTTTGCCAGCGCTAAGATTGGCCTAGGGGGTCGCATGGGCATTGATGCGACTACAAAGA
TTCCCCCGGAAACGGATCATCCTTGGGGAGAACCCCTGAAAGCAGATCCAGATGTGGCAGCGATGGTAGATCGACGTTGG
GCTGAATATGGTCTAGCAGATCTGAATCTAGGTGAGGTAGACCCGAATTTATTTGGTTATGAGATGCCCTAG

Upstream 100 bases:

>100_bases
CCAGTTTCCTCGCTGTTGAAAAAAATAGCACCCCAGGGATGTTCTCAATTCCGCCCATAATATAAATAGTGCATAACGAC
TATCGCCCCCAAAGGAATCC

Downstream 100 bases:

>100_bases
GTCTAGATTTTTAGCTAGCGCCATACTATTGCCCTGTTGGTCCGACTTGCCACAAAAACAGCAGGTTATCTCCAAATCTA
GCCCAAGCCATTGATTAGCC

Product: 3-octaprenyl-4-hydroxybenzoate carboxylyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MARDLRKFIQRLEERGQLKRIQALVDPKLEIAEISDRMLQQGGPGLLFENVKGSDYPVAVNLLGTVERTCWAMNMESQSE
LEDLGKKLAMLQQPKPPKKLNQFIDFGKVLFDVVKAKPQRDLLPPCHQVVLKDEQVDLNKIPMIQPYIGDGGKVVTFGLV
ITKDCETGTPNVGVYRLQLQSKNTMTVQWLSVRGGARHLRKAAEQGKKLEIAIAVGIDPLIIMAAATPIPVDLSEWLFAG
LYGGSGVHLAKCKTVDLEVPAQSEFVLEGTITPGETGVDGPFGDHMGYYGGINEAAPLIRFHCMTHRKNPIYLTTFSGRP
PKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAVISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDV
NIRDPRQVVWAVSSKVDPVRDVFILPETPFDTLDFASAKIGLGGRMGIDATTKIPPETDHPWGEPLKADPDVAAMVDRRW
AEYGLADLNLGEVDPNLFGYEMP

Sequences:

>Translated_503_residues
MARDLRKFIQRLEERGQLKRIQALVDPKLEIAEISDRMLQQGGPGLLFENVKGSDYPVAVNLLGTVERTCWAMNMESQSE
LEDLGKKLAMLQQPKPPKKLNQFIDFGKVLFDVVKAKPQRDLLPPCHQVVLKDEQVDLNKIPMIQPYIGDGGKVVTFGLV
ITKDCETGTPNVGVYRLQLQSKNTMTVQWLSVRGGARHLRKAAEQGKKLEIAIAVGIDPLIIMAAATPIPVDLSEWLFAG
LYGGSGVHLAKCKTVDLEVPAQSEFVLEGTITPGETGVDGPFGDHMGYYGGINEAAPLIRFHCMTHRKNPIYLTTFSGRP
PKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAVISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDV
NIRDPRQVVWAVSSKVDPVRDVFILPETPFDTLDFASAKIGLGGRMGIDATTKIPPETDHPWGEPLKADPDVAAMVDRRW
AEYGLADLNLGEVDPNLFGYEMP
>Mature_502_residues
ARDLRKFIQRLEERGQLKRIQALVDPKLEIAEISDRMLQQGGPGLLFENVKGSDYPVAVNLLGTVERTCWAMNMESQSEL
EDLGKKLAMLQQPKPPKKLNQFIDFGKVLFDVVKAKPQRDLLPPCHQVVLKDEQVDLNKIPMIQPYIGDGGKVVTFGLVI
TKDCETGTPNVGVYRLQLQSKNTMTVQWLSVRGGARHLRKAAEQGKKLEIAIAVGIDPLIIMAAATPIPVDLSEWLFAGL
YGGSGVHLAKCKTVDLEVPAQSEFVLEGTITPGETGVDGPFGDHMGYYGGINEAAPLIRFHCMTHRKNPIYLTTFSGRPP
KEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAVISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVN
IRDPRQVVWAVSSKVDPVRDVFILPETPFDTLDFASAKIGLGGRMGIDATTKIPPETDHPWGEPLKADPDVAAMVDRRWA
EYGLADLNLGEVDPNLFGYEMP

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:
GO:0005886: 3-octaprenyl-4-hydroxybenzoate carboxylyase
GO:0006744: 3-octaprenyl-4-hydroxybenzoate carboxylyase
GO:0016829: 3-octaprenyl-4-hydroxybenzoate carboxylyase
GO:0016831: 3-octaprenyl-4-hydroxybenzoate carboxylyase

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=491, Percent_Identity=46.2321792260692, Blast_Score=447, Evalue=1e-127,
Organism=Saccharomyces cerevisiae, GI6320748, Length=460, Percent_Identity=27.1739130434783, Blast_Score=127, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55754; Mature: 55623

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDLRKFIQRLEERGQLKRIQALVDPKLEIAEISDRMLQQGGPGLLFENVKGSDYPVAV
CCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEE
NLLGTVERTCWAMNMESQSELEDLGKKLAMLQQPKPPKKLNQFIDFGKVLFDVVKAKPQR
EEHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
DLLPPCHQVVLKDEQVDLNKIPMIQPYIGDGGKVVTFGLVITKDCETGTPNVGVYRLQLQ
CCCCHHHHHHCCCCCCCCCCCCEECCEECCCCEEEEEEEEEEECCCCCCCCCEEEEEEEE
SKNTMTVQWLSVRGGARHLRKAAEQGKKLEIAIAVGIDPLIIMAAATPIPVDLSEWLFAG
CCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
LYGGSGVHLAKCKTVDLEVPAQSEFVLEGTITPGETGVDGPFGDHMGYYGGINEAAPLIR
CCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
FHCMTHRKNPIYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKA
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEE
AVISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVNIRDPRQVVWAVSSKVDPVR
EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCC
DVFILPETPFDTLDFASAKIGLGGRMGIDATTKIPPETDHPWGEPLKADPDVAAMVDRRW
EEEEECCCCCCCHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEYGLADLNLGEVDPNLFGYEMP
HHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARDLRKFIQRLEERGQLKRIQALVDPKLEIAEISDRMLQQGGPGLLFENVKGSDYPVAV
CHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEE
NLLGTVERTCWAMNMESQSELEDLGKKLAMLQQPKPPKKLNQFIDFGKVLFDVVKAKPQR
EEHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
DLLPPCHQVVLKDEQVDLNKIPMIQPYIGDGGKVVTFGLVITKDCETGTPNVGVYRLQLQ
CCCCHHHHHHCCCCCCCCCCCCEECCEECCCCEEEEEEEEEEECCCCCCCCCEEEEEEEE
SKNTMTVQWLSVRGGARHLRKAAEQGKKLEIAIAVGIDPLIIMAAATPIPVDLSEWLFAG
CCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
LYGGSGVHLAKCKTVDLEVPAQSEFVLEGTITPGETGVDGPFGDHMGYYGGINEAAPLIR
CCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
FHCMTHRKNPIYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKA
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEE
AVISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVNIRDPRQVVWAVSSKVDPVR
EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCC
DVFILPETPFDTLDFASAKIGLGGRMGIDATTKIPPETDHPWGEPLKADPDVAAMVDRRW
EEEEECCCCCCCHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEYGLADLNLGEVDPNLFGYEMP
HHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]