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The map label for this gene is rbpD [H]

Identifier: 158335180

GI number: 158335180

Start: 2014474

End: 2014722

Strand: Direct

Name: rbpD [H]

Synonym: AM1_2023

Alternate gene names: 158335180

Gene position: 2014474-2014722 (Clockwise)

Preceding gene: 158335179

Following gene: 158335183

Centisome position: 30.97

GC content: 43.78

Gene sequence:

>249_bases
ATGACCATTTATATTGGCAATCTGTCTTACCAAGCCACTGAAAACGATGTCCGAGAAGTTTTTAATGAGTATGGCACTGT
TAAGCGAGTTGTTCTCCCAGTAGATCGTGAAACAGGCCGGATGCGGGGTTTTGCCTTCGTGGAAATGACAGAAGATAATG
ATGAAGAAACAGCGATTGCTGATTTAGATGGTGCTGAGTGGATGGGACGACAGCTAAAAGTCAATAAAGCTAAGCCTCGC
GAACGATAA

Upstream 100 bases:

>100_bases
ATCGATTTGCTGTGTCCACTGAAATAACTGCTGCTTAGGTGTATTGTTGTCTGTCCTCAAGCATTCGTTTACCGTTCAAT
TCTAATCTCTGAGTTTTACC

Downstream 100 bases:

>100_bases
ACGATCATTCCAAAATTCTCAGTTGTCTTTAGCTATTCACCTATAGCCTTTCAGTATTAAATCTGTGTCGGGAGCCTCAA
CGGCTCATAGGGCAGATACG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MTIYIGNLSYQATENDVREVFNEYGTVKRVVLPVDRETGRMRGFAFVEMTEDNDEETAIADLDGAEWMGRQLKVNKAKPR
ER

Sequences:

>Translated_82_residues
MTIYIGNLSYQATENDVREVFNEYGTVKRVVLPVDRETGRMRGFAFVEMTEDNDEETAIADLDGAEWMGRQLKVNKAKPR
ER
>Mature_81_residues
TIYIGNLSYQATENDVREVFNEYGTVKRVVLPVDRETGRMRGFAFVEMTEDNDEETAIADLDGAEWMGRQLKVNKAKPRE
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=40.2597402597403, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=43.75, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=41.5584415584416, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=43.5897435897436, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17532819, Length=77, Percent_Identity=41.5584415584416, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17532817, Length=77, Percent_Identity=41.5584415584416, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=38.1578947368421, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9473; Mature: 9342

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYIGNLSYQATENDVREVFNEYGTVKRVVLPVDRETGRMRGFAFVEMTEDNDEETAIA
CEEEECCCEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEE
DLDGAEWMGRQLKVNKAKPRER
CCCCCHHCCCEEEECCCCCCCC
>Mature Secondary Structure 
TIYIGNLSYQATENDVREVFNEYGTVKRVVLPVDRETGRMRGFAFVEMTEDNDEETAIA
EEEECCCEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEE
DLDGAEWMGRQLKVNKAKPRER
CCCCCHHCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]