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The map label for this gene is yccZ [C]

Identifier: 158335178

GI number: 158335178

Start: 2011218

End: 2012615

Strand: Direct

Name: yccZ [C]

Synonym: AM1_2021

Alternate gene names: 158335178

Gene position: 2011218-2012615 (Clockwise)

Preceding gene: 158335176

Following gene: 158335179

Centisome position: 30.92

GC content: 48.21

Gene sequence:

>1398_bases
ATGTCTGCCGTAGCTCAAGTATCAACCTCAGAAGCCAACCAAACTTCTGAAGTTTTAACCGTTGCTCAAAATGCTGTAAC
CCCTAACCGTAATGCCCTAGCTAATCAGCAAGCTTATGTATTAGGACCTGGAGATGAAATCCAGCTCACAATGTTTGGGC
AGCCTGAACTGTTTACCACTAACTACCGGGTGTTAGTAGATGGGACGGTCAGCCTACCCTTAATCGGTCGGGTTCCGGTC
GTCGGTCGCTCGATTGGCCAGGCTGAACGAGAAATATCTTTGCGCTACACACGCTTGTATCGACGCCCTTACGTCACCAT
GGTTTTGGTGAGAGCAAGAACAGTCACCCTAGCCGTAACAGGTGAAGTTAGACGGCCTGGGACTTACCCAGTGGAATCGC
CTAATCAAATCCCTACTGTGACCCAGCTGATTCAGTTAGCAGGTGGTGCATCACAATCTGCCGATTTAAGTAACGTCATT
GTTAGACGCCCTCAATTGAATGGATCCGTACAGAACATCCCAGTAGATTTACTCAGGCTACTCCAGGAAGGTGACTTAAG
CCAGAATCTAGAGTTACGTGATAAAGATACCGTTGTCATCAATGCCACTACAGAAATAGATAGACGGAACTCCTTACTGG
TCAGTAATGCCAGCTTTTCCGCAGATCGGTCTGAGCCGATCAATATAGCCATAGTGGGTGAGGTGTATCGTCCCGGTCCT
CATACCATACGACCAGGTAGTGCTGACGTTAGAGATGCAGGAACCCTTGGAAATTCCAGGGCAGCATCCACGGAATTACC
CACCGTCACCCAAGCCATTCAAACAGCTGGTGGTATCAAACCAGAGGCCAATATTCGTGAAGTTCGAGTCATTCGACGTC
CCCACAACGGAGACCCACAAACTATTGGTGTTGATCTCTGGAAGCTTTTGAAAGAAGGCGATTTATCTCAAGATATTGCC
TTACAAGCAGGGGATACGATTGAAGTTCCCAAGGCCGTTGGCCTAACTGCTGCAGAAATGACAGAACTAGCGACGGTTAG
CTTTGCCCCTGCCACGATCGACGTTAATGTAGTCGGAGAAGTTAAAAGCCCTGGAGTTGTCAAGATTCAACCCAATACCC
CACTCAACACTGCCGTGCTAGCAGCTGGGGGATTTGATGATAGACGAGCGAATAAAAGCAAAGTTAAGTTAATCCGCCTC
AATCCAGATGGTACCGTTGCTCAAAGGGATATCAAGGTCAATTTTAGCGAACCTGTTAATGAAGACACGAACCCTGCCCT
TCGCAACAATGATGTCATCGTCGTCGGCCGCTCTGGATTGACGAAGTTTGGGGATGGTTTGCGCAATGTGCTCTCCCCCA
TTACCAGCGGTTTTGGCCTCTTTAACATTTTGTTCTAA

Upstream 100 bases:

>100_bases
GTTTTCTTCTAGGTATATAAATTAACTAGGGTTTTAACTAACTATGATTAGGCCTCTTCACTCTGCAGCTCTGATTGCTA
TTGCAGCCTCGATAACCCCC

Downstream 100 bases:

>100_bases
GAGACTGACAACTCGATTACAGACCATCCATCATCACATACTGTCCAACAACAGCACATGAGTTTTATGTGCTGTTGTTG
CGTTTTGCCCCAATGAACAG

Product: polysaccharide export protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSAVAQVSTSEANQTSEVLTVAQNAVTPNRNALANQQAYVLGPGDEIQLTMFGQPELFTTNYRVLVDGTVSLPLIGRVPV
VGRSIGQAEREISLRYTRLYRRPYVTMVLVRARTVTLAVTGEVRRPGTYPVESPNQIPTVTQLIQLAGGASQSADLSNVI
VRRPQLNGSVQNIPVDLLRLLQEGDLSQNLELRDKDTVVINATTEIDRRNSLLVSNASFSADRSEPINIAIVGEVYRPGP
HTIRPGSADVRDAGTLGNSRAASTELPTVTQAIQTAGGIKPEANIREVRVIRRPHNGDPQTIGVDLWKLLKEGDLSQDIA
LQAGDTIEVPKAVGLTAAEMTELATVSFAPATIDVNVVGEVKSPGVVKIQPNTPLNTAVLAAGGFDDRRANKSKVKLIRL
NPDGTVAQRDIKVNFSEPVNEDTNPALRNNDVIVVGRSGLTKFGDGLRNVLSPITSGFGLFNILF

Sequences:

>Translated_465_residues
MSAVAQVSTSEANQTSEVLTVAQNAVTPNRNALANQQAYVLGPGDEIQLTMFGQPELFTTNYRVLVDGTVSLPLIGRVPV
VGRSIGQAEREISLRYTRLYRRPYVTMVLVRARTVTLAVTGEVRRPGTYPVESPNQIPTVTQLIQLAGGASQSADLSNVI
VRRPQLNGSVQNIPVDLLRLLQEGDLSQNLELRDKDTVVINATTEIDRRNSLLVSNASFSADRSEPINIAIVGEVYRPGP
HTIRPGSADVRDAGTLGNSRAASTELPTVTQAIQTAGGIKPEANIREVRVIRRPHNGDPQTIGVDLWKLLKEGDLSQDIA
LQAGDTIEVPKAVGLTAAEMTELATVSFAPATIDVNVVGEVKSPGVVKIQPNTPLNTAVLAAGGFDDRRANKSKVKLIRL
NPDGTVAQRDIKVNFSEPVNEDTNPALRNNDVIVVGRSGLTKFGDGLRNVLSPITSGFGLFNILF
>Mature_464_residues
SAVAQVSTSEANQTSEVLTVAQNAVTPNRNALANQQAYVLGPGDEIQLTMFGQPELFTTNYRVLVDGTVSLPLIGRVPVV
GRSIGQAEREISLRYTRLYRRPYVTMVLVRARTVTLAVTGEVRRPGTYPVESPNQIPTVTQLIQLAGGASQSADLSNVIV
RRPQLNGSVQNIPVDLLRLLQEGDLSQNLELRDKDTVVINATTEIDRRNSLLVSNASFSADRSEPINIAIVGEVYRPGPH
TIRPGSADVRDAGTLGNSRAASTELPTVTQAIQTAGGIKPEANIREVRVIRRPHNGDPQTIGVDLWKLLKEGDLSQDIAL
QAGDTIEVPKAVGLTAAEMTELATVSFAPATIDVNVVGEVKSPGVVKIQPNTPLNTAVLAAGGFDDRRANKSKVKLIRLN
PDGTVAQRDIKVNFSEPVNEDTNPALRNNDVIVVGRSGLTKFGDGLRNVLSPITSGFGLFNILF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=179, Percent_Identity=34.0782122905028, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788376, Length=191, Percent_Identity=31.413612565445, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 49935; Mature: 49804

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVAQVSTSEANQTSEVLTVAQNAVTPNRNALANQQAYVLGPGDEIQLTMFGQPELFTT
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCEEEECCCCEEEEEEECCCCEEEC
NYRVLVDGTVSLPLIGRVPVVGRSIGQAEREISLRYTRLYRRPYVTMVLVRARTVTLAVT
CEEEEEECCCCCCEECCCCHHCCHHCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEE
GEVRRPGTYPVESPNQIPTVTQLIQLAGGASQSADLSNVIVRRPQLNGSVQNIPVDLLRL
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHH
LQEGDLSQNLELRDKDTVVINATTEIDRRNSLLVSNASFSADRSEPINIAIVGEVYRPGP
HHHCCCCCCCEECCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECCCC
HTIRPGSADVRDAGTLGNSRAASTELPTVTQAIQTAGGIKPEANIREVRVIRRPHNGDPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC
TIGVDLWKLLKEGDLSQDIALQAGDTIEVPKAVGLTAAEMTELATVSFAPATIDVNVVGE
EEHHHHHHHHHHCCCCCCEEEECCCCEECCHHHCCCHHHHHHHHEEEECCEEEEEEEEEC
VKSPGVVKIQPNTPLNTAVLAAGGFDDRRANKSKVKLIRLNPDGTVAQRDIKVNFSEPVN
CCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
EDTNPALRNNDVIVVGRSGLTKFGDGLRNVLSPITSGFGLFNILF
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHEECC
>Mature Secondary Structure 
SAVAQVSTSEANQTSEVLTVAQNAVTPNRNALANQQAYVLGPGDEIQLTMFGQPELFTT
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCEEEECCCCEEEEEEECCCCEEEC
NYRVLVDGTVSLPLIGRVPVVGRSIGQAEREISLRYTRLYRRPYVTMVLVRARTVTLAVT
CEEEEEECCCCCCEECCCCHHCCHHCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEE
GEVRRPGTYPVESPNQIPTVTQLIQLAGGASQSADLSNVIVRRPQLNGSVQNIPVDLLRL
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHH
LQEGDLSQNLELRDKDTVVINATTEIDRRNSLLVSNASFSADRSEPINIAIVGEVYRPGP
HHHCCCCCCCEECCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEECCCC
HTIRPGSADVRDAGTLGNSRAASTELPTVTQAIQTAGGIKPEANIREVRVIRRPHNGDPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC
TIGVDLWKLLKEGDLSQDIALQAGDTIEVPKAVGLTAAEMTELATVSFAPATIDVNVVGE
EEHHHHHHHHHHCCCCCCEEEECCCCEECCHHHCCCHHHHHHHHEEEECCEEEEEEEEEC
VKSPGVVKIQPNTPLNTAVLAAGGFDDRRANKSKVKLIRLNPDGTVAQRDIKVNFSEPVN
CCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
EDTNPALRNNDVIVVGRSGLTKFGDGLRNVLSPITSGFGLFNILF
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]