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The map label for this gene is yxbC [H]

Identifier: 158335076

GI number: 158335076

Start: 1914071

End: 1915321

Strand: Reverse

Name: yxbC [H]

Synonym: AM1_1916

Alternate gene names: 158335076

Gene position: 1915321-1914071 (Counterclockwise)

Preceding gene: 158335077

Following gene: 158335075

Centisome position: 29.45

GC content: 44.84

Gene sequence:

>1251_bases
TTGCTACCCTCGTTGAAAATCACATCCTGGCCCATGAAGGTTGAGTCTCAATTTGCCCGTTTAATCTCTCCTTGCACGAT
TGAGGATTTTTTCCAGACCTATTGGGAAACAAAAACCCTCTATTTGCCAAGGAATGATGCCTCATTTTATGGGTCAGTTT
TACAGCCAGAGGACATCGATCTTCTGCTGCAAAACAAAGCGTTGTTGGCGGATTACAATAACTTTCGCCTAGTGGATCAG
GGTAATAAGCTCAGTCTGGAAGACTGGTGTGATCGCCACTCTAAATCCCAACAGTATTTTATTAATAACGACAAGCTCTA
TAGCCTGTTGCATCAAGGCTTAACCTTGACTATCAATGGGGCTCATAAGAAAATTCCCAAGCTGAGACATTTTTGCAGTG
CTCTAGAATGCGAGCTGAAGTTTAAGCTACGAACCAATATCTATATCACCCCCCCCCAGGCCCAGGGCTTAGCCCCTCAT
TACGATGAACATGATGTGTTTATTCTCCAAATCACGGGGGAAAAGGAATGGAAACTCTACCATTCTCCTGTTGAACTCCC
CTCTCACATCCGCGATCAAAGTATTGGCCGCCATAAACTGGCGGAGCCGGAATTAACGGTAATGCTTCAGCCTGGTGATT
TGCTTTATATTCCTCGGGGGGTAGTCCATCAAGCGGCTAGTCAGGAGACCACCTCTGTGCATGCATCCCTAGGGTTATAT
CCCACCTTCGCCTATGAACTCTTGGAGGAGTTGGTCACCATCGCCCAGGCTGACCCAGCCTTTCGGAAAGCGATTCCCCA
CGGTTTTTCCAGTTCTGAGCAACAGCAGGCTTTTTATGAGTTGTTTCAAACCCTGAGTCAGTACTTAATTAGTAATGTTA
AGACTGAAGAACTGGTAGAGCGGAAGCATAAGGTATTTTTGTGCGATCGCAAATCAGAAGACCAAGGTCGATTCCAAGAT
CTGATTTACCTGCCACAGCTCAATCTCAACTCTGTCGTTGCTCGCAGACCCAATATTCTCTTCTCCGTTGATAGAGATTC
CACTCAAATCGTTTTGAACTTCTATCAAAAAAGTCTAACCTTTCCTATTTTCCTAGCGACCTCCCTGACTGATCTGATTG
ACCATCCCTATCTAGCTGTTAAAGACATTGGTGGTTTGATTAACGATGCTGGACGATTGTCCTTAGCTCAAAACTTGATT
CAAGAGGGATTTCTGATGATTAAAGCGATTGAACCCACTTCTACTTCCTAA

Upstream 100 bases:

>100_bases
GAGCGAGGAGCCAACCATTTTAAGCAACTGATGCTCCTGGCTCAACAAGTGCCACTTTTGCGTCTCTTACGGCCAGCCTC
CCTCGACTTACTACCGGACA

Downstream 100 bases:

>100_bases
CATTTGCCCCTTCTGCCCCCATGAGCGCAATTACTGGCTTTGTCTATCCTCACCCTCATCCTGAGGGGAGCGATTATTTG
CACCAAATGGTCCAATCTCT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MLPSLKITSWPMKVESQFARLISPCTIEDFFQTYWETKTLYLPRNDASFYGSVLQPEDIDLLLQNKALLADYNNFRLVDQ
GNKLSLEDWCDRHSKSQQYFINNDKLYSLLHQGLTLTINGAHKKIPKLRHFCSALECELKFKLRTNIYITPPQAQGLAPH
YDEHDVFILQITGEKEWKLYHSPVELPSHIRDQSIGRHKLAEPELTVMLQPGDLLYIPRGVVHQAASQETTSVHASLGLY
PTFAYELLEELVTIAQADPAFRKAIPHGFSSSEQQQAFYELFQTLSQYLISNVKTEELVERKHKVFLCDRKSEDQGRFQD
LIYLPQLNLNSVVARRPNILFSVDRDSTQIVLNFYQKSLTFPIFLATSLTDLIDHPYLAVKDIGGLINDAGRLSLAQNLI
QEGFLMIKAIEPTSTS

Sequences:

>Translated_416_residues
MLPSLKITSWPMKVESQFARLISPCTIEDFFQTYWETKTLYLPRNDASFYGSVLQPEDIDLLLQNKALLADYNNFRLVDQ
GNKLSLEDWCDRHSKSQQYFINNDKLYSLLHQGLTLTINGAHKKIPKLRHFCSALECELKFKLRTNIYITPPQAQGLAPH
YDEHDVFILQITGEKEWKLYHSPVELPSHIRDQSIGRHKLAEPELTVMLQPGDLLYIPRGVVHQAASQETTSVHASLGLY
PTFAYELLEELVTIAQADPAFRKAIPHGFSSSEQQQAFYELFQTLSQYLISNVKTEELVERKHKVFLCDRKSEDQGRFQD
LIYLPQLNLNSVVARRPNILFSVDRDSTQIVLNFYQKSLTFPIFLATSLTDLIDHPYLAVKDIGGLINDAGRLSLAQNLI
QEGFLMIKAIEPTSTS
>Mature_416_residues
MLPSLKITSWPMKVESQFARLISPCTIEDFFQTYWETKTLYLPRNDASFYGSVLQPEDIDLLLQNKALLADYNNFRLVDQ
GNKLSLEDWCDRHSKSQQYFINNDKLYSLLHQGLTLTINGAHKKIPKLRHFCSALECELKFKLRTNIYITPPQAQGLAPH
YDEHDVFILQITGEKEWKLYHSPVELPSHIRDQSIGRHKLAEPELTVMLQPGDLLYIPRGVVHQAASQETTSVHASLGLY
PTFAYELLEELVTIAQADPAFRKAIPHGFSSSEQQQAFYELFQTLSQYLISNVKTEELVERKHKVFLCDRKSEDQGRFQD
LIYLPQLNLNSVVARRPNILFSVDRDSTQIVLNFYQKSLTFPIFLATSLTDLIDHPYLAVKDIGGLINDAGRLSLAQNLI
QEGFLMIKAIEPTSTS

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Homo sapiens, GI23346418, Length=264, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI110227621, Length=264, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI110227619, Length=264, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI106879206, Length=333, Percent_Identity=26.7267267267267, Blast_Score=120, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71991759, Length=272, Percent_Identity=24.6323529411765, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI18858091, Length=269, Percent_Identity=27.8810408921933, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022777
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 47663; Mature: 47663

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSLKITSWPMKVESQFARLISPCTIEDFFQTYWETKTLYLPRNDASFYGSVLQPEDID
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCE
LLLQNKALLADYNNFRLVDQGNKLSLEDWCDRHSKSQQYFINNDKLYSLLHQGLTLTING
EEEECCEEEEECCCEEEEECCCEECHHHHHHHCCCCCEEEECCHHHHHHHHCCEEEEECC
AHKKIPKLRHFCSALECELKFKLRTNIYITPPQAQGLAPHYDEHDVFILQITGEKEWKLY
HHHHHHHHHHHHHHHCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
HSPVELPSHIRDQSIGRHKLAEPELTVMLQPGDLLYIPRGVVHQAASQETTSVHASLGLY
ECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECHHHHHHHCCCCHHEEHHHCCCC
PTFAYELLEELVTIAQADPAFRKAIPHGFSSSEQQQAFYELFQTLSQYLISNVKTEELVE
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RKHKVFLCDRKSEDQGRFQDLIYLPQLNLNSVVARRPNILFSVDRDSTQIVLNFYQKSLT
HHCEEEEECCCCCCCCCHHHEEEECCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
FPIFLATSLTDLIDHPYLAVKDIGGLINDAGRLSLAQNLIQEGFLMIKAIEPTSTS
CEEHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEECCCCCC
>Mature Secondary Structure
MLPSLKITSWPMKVESQFARLISPCTIEDFFQTYWETKTLYLPRNDASFYGSVLQPEDID
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCE
LLLQNKALLADYNNFRLVDQGNKLSLEDWCDRHSKSQQYFINNDKLYSLLHQGLTLTING
EEEECCEEEEECCCEEEEECCCEECHHHHHHHCCCCCEEEECCHHHHHHHHCCEEEEECC
AHKKIPKLRHFCSALECELKFKLRTNIYITPPQAQGLAPHYDEHDVFILQITGEKEWKLY
HHHHHHHHHHHHHHHCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
HSPVELPSHIRDQSIGRHKLAEPELTVMLQPGDLLYIPRGVVHQAASQETTSVHASLGLY
ECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECHHHHHHHCCCCHHEEHHHCCCC
PTFAYELLEELVTIAQADPAFRKAIPHGFSSSEQQQAFYELFQTLSQYLISNVKTEELVE
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RKHKVFLCDRKSEDQGRFQDLIYLPQLNLNSVVARRPNILFSVDRDSTQIVLNFYQKSLT
HHCEEEEECCCCCCCCCHHHEEEECCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
FPIFLATSLTDLIDHPYLAVKDIGGLINDAGRLSLAQNLIQEGFLMIKAIEPTSTS
CEEHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]