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The map label for this gene is yciR [C]

Identifier: 158334888

GI number: 158334888

Start: 1709772

End: 1711889

Strand: Reverse

Name: yciR [C]

Synonym: AM1_1725

Alternate gene names: 158334888

Gene position: 1711889-1709772 (Counterclockwise)

Preceding gene: 158334889

Following gene: 158334886

Centisome position: 26.32

GC content: 48.73

Gene sequence:

>2118_bases
GTGAGGCATCTTGATCCACTGCATATCAAACTATTGCTGGTGGAAGATGATGAAGATGACTATTTCTTTTTTGAAGATCT
CCTAGACGATTTTCAAAGCATCCAGTTTGATCTGGACTGGGCGGATACCTATGACAAAGGACTAGAGGCGGTTCAGCGTC
ACCAGCATGATATTTATGTGTTCGATTTTCGCTTAGGCAGTCGAACAGGCTTGGACTTGCTAGAAGAAGTGGTTGCTTTA
GGCCATCGGATTCCGATTATCTTGTTGACGGGCCAGGAAGATCGCGAGATCGACTTAGCTGCGATGACGGCAGGGGCGAC
GGATTATTTGGTGAAAGGGATGATTACATCCGCTTTACTGGAGCGGTCGATTCGCTATGCCATTAACCATACTCGGACAT
TAGTGGCGTTGCAGGAGCGAGAGGAACAATATAATTTGGTGGCCCAAGCCTCAAATGATGGGCTTTGGGATTGGAACTTA
CAAACCCATCAAGTTTATTATTCTCCCCGTTGGGCCGCGATTATTGGCCAAGCAGAAGTGACGCTACAGCCTTCTATTCA
AGAATGGTTTGATCGCATTCACCCGGAAGATAAGGAACGATTCCGCATCGATTTACGGCGGCATTTGCGACGGGAAACAA
CCGCCTTTGAATGTCAATATCGCATGCTTCACCGGGACCAGTCCTATCGCTGGGTCAGTAGCCGCGGCATGGCGGTGTTT
GGCCCCAAAAATCGCGTGGTACGGATGGCAGGGTCGCACACGGATCTCACTAACCATGTGGCGCTTTACGATCATCTCAC
AGGGCTACCCAGTCGGGCGTTATTTTTGGACCAGCTTCATCGGACTCTGACGCGCGTCAATCGCCAGACCAACTATCTAT
TTGCCGTGCTGTTTCTGGACTGCGATCGGTTTAAGGTTATTAATGATAGTTTGGGCCATGCCATTGGGGATCAGCTGCTG
ATTGAAGTGGCTCAACGGCTGACAACAGCGTTACGCCCCGGTGATGTGATTGCTCGGTTGGGCGGTGATGAGTTTGCCAT
CCTTTTGGAGAATATTGCTGGGCAAGATCAAGCGGAACAAGTGGCCAGCCGTCTCAATCGAGAGTTAGAGAAAGCCTTTG
AACTTCAGGGGCATACAGTTTATATTTCGGCCAGCATCGGGATTGCTCTGAATTCAGACCATTCGCCCCAGGCAGAAAAT
TTATTGCGGGATGCGGATAATGCCATGTATCGAGCCAAAGCCCTGGGCAAGTCTCGATATGTCGTCTTCGAAGCAGCCAT
GCGCGATCGCGTTCAGGCATTGCTTCGGGTAGAAACCGACCTGCGAGCTGCCATTGCCAACCAGGAATTTCAGCTCTATT
ATCAACCGATTATTTCCCTCAAAACCCATGAAATCGTTAGCCTAGAAGCGCTGATCCGCTGGCAACATCCTCAGCGAGGC
TTAATTTCGCCCCAGGAATTTATTCCTGTGGCGGAGGAAACGGGATTGATCCTAGCGATTGGTCAGTGGGTCCTGGAAGA
ATCCTGTCAACAGCTATGGCAGTGGCATCAGACCCTGACTGAGATTCCACCCTTGAGTATTAGCGTTAATTTGTCCCGTA
AGCAGTTTTCTCAGGCCAGTTTAGGCAAACAAATCCAATCGATTCTATCGGAGACGGGAGTCAGTGCTCGTCACCTCAAG
CTAGAAATTACAGAAACCATGATTATGGAAAATGAGGTGATGGTTTCTGAACTCATTAGTCAACTGCGCGCTTTGGGGCT
TCAACTCCAAATCGACGACTTTGGGACTGGTTATTCATCTCTGAGCTTTTTACATAACTTCCCCTTAGACACCCTGAAAA
TCGATCGTTCTTTTATTGAAGGGTTGGTGACTGATACAGAAAAGTCAGAAATTGTGCGAACAATGATTACCTTGGCGCAC
AACTTAGGGATGACTGCAATTGCTGAGGGAGTAGAAACCCAAGCACAGCTGCAATGGCTCCAGCAACATCATTGTGATTG
TGTTCAGGGCTACTTATTATCTAAGCCCCTTTCAGCGGCTCAAATGCAAAAAGCGCTGATGCAGTCTCACAGGGTGTTTG
TACAACCATTGGAGACTAGCACTGTGGTCTCGGCCTAA

Upstream 100 bases:

>100_bases
TACATCACCAAACCTGTGACCTTTGACGCATTAGTTGAGGTGATGCAAACCCTAGGCCAGTACTGGTTTACCGTTGTGGC
ATTACCCCCGGAGCAATGTT

Downstream 100 bases:

>100_bases
GGTCTAGAACTTGACCAGAGGGCAAGCAATGTCCTCCTACTGCTGTGACTTATTCAAGCGATGGTTCAAGGGAGGCTTGA
GGGGGAATTCTATGACTCCC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 705

Protein sequence:

>705_residues
MRHLDPLHIKLLLVEDDEDDYFFFEDLLDDFQSIQFDLDWADTYDKGLEAVQRHQHDIYVFDFRLGSRTGLDLLEEVVAL
GHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALLERSIRYAINHTRTLVALQEREEQYNLVAQASNDGLWDWNL
QTHQVYYSPRWAAIIGQAEVTLQPSIQEWFDRIHPEDKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVF
GPKNRVVRMAGSHTDLTNHVALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVINDSLGHAIGDQLL
IEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNRELEKAFELQGHTVYISASIGIALNSDHSPQAEN
LLRDADNAMYRAKALGKSRYVVFEAAMRDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRG
LISPQEFIPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQASLGKQIQSILSETGVSARHLK
LEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSSLSFLHNFPLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAH
NLGMTAIAEGVETQAQLQWLQQHHCDCVQGYLLSKPLSAAQMQKALMQSHRVFVQPLETSTVVSA

Sequences:

>Translated_705_residues
MRHLDPLHIKLLLVEDDEDDYFFFEDLLDDFQSIQFDLDWADTYDKGLEAVQRHQHDIYVFDFRLGSRTGLDLLEEVVAL
GHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALLERSIRYAINHTRTLVALQEREEQYNLVAQASNDGLWDWNL
QTHQVYYSPRWAAIIGQAEVTLQPSIQEWFDRIHPEDKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVF
GPKNRVVRMAGSHTDLTNHVALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVINDSLGHAIGDQLL
IEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNRELEKAFELQGHTVYISASIGIALNSDHSPQAEN
LLRDADNAMYRAKALGKSRYVVFEAAMRDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRG
LISPQEFIPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQASLGKQIQSILSETGVSARHLK
LEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSSLSFLHNFPLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAH
NLGMTAIAEGVETQAQLQWLQQHHCDCVQGYLLSKPLSAAQMQKALMQSHRVFVQPLETSTVVSA
>Mature_705_residues
MRHLDPLHIKLLLVEDDEDDYFFFEDLLDDFQSIQFDLDWADTYDKGLEAVQRHQHDIYVFDFRLGSRTGLDLLEEVVAL
GHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALLERSIRYAINHTRTLVALQEREEQYNLVAQASNDGLWDWNL
QTHQVYYSPRWAAIIGQAEVTLQPSIQEWFDRIHPEDKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVF
GPKNRVVRMAGSHTDLTNHVALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVINDSLGHAIGDQLL
IEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNRELEKAFELQGHTVYISASIGIALNSDHSPQAEN
LLRDADNAMYRAKALGKSRYVVFEAAMRDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRG
LISPQEFIPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQASLGKQIQSILSETGVSARHLK
LEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSSLSFLHNFPLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAH
NLGMTAIAEGVETQAQLQWLQQHHCDCVQGYLLSKPLSAAQMQKALMQSHRVFVQPLETSTVVSA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=498, Percent_Identity=34.7389558232932, Blast_Score=292, Evalue=4e-80,
Organism=Escherichia coli, GI87081921, Length=421, Percent_Identity=35.1543942992874, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=29.9539170506912, Blast_Score=189, Evalue=7e-49,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=35.7723577235772, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=35.3413654618474, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081845, Length=257, Percent_Identity=32.295719844358, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=35.0210970464135, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=31.7991631799163, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1787055, Length=268, Percent_Identity=30.9701492537313, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=32.5581395348837, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1788849, Length=410, Percent_Identity=28.0487804878049, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1788381, Length=423, Percent_Identity=28.8416075650118, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=41.025641025641, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=34.6590909090909, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082096, Length=239, Percent_Identity=30.1255230125523, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=31.7919075144509, Blast_Score=93, Evalue=8e-20,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=37.7483443708609, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=33.9506172839506, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=156, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=200, Percent_Identity=28, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=33.1325301204819, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=31.0734463276836, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=31.6770186335404, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 80561; Mature: 80561

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHLDPLHIKLLLVEDDEDDYFFFEDLLDDFQSIQFDLDWADTYDKGLEAVQRHQHDIYV
CCCCCCEEEEEEEEECCCCCEEHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHCCCCEEE
FDFRLGSRTGLDLLEEVVALGHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALL
EEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHH
ERSIRYAINHTRTLVALQEREEQYNLVAQASNDGLWDWNLQTHQVYYSPRWAAIIGQAEV
HHHHHHHHHHHHHEEHHHHHHHHHCEEEECCCCCEEECCCEEEEEEECCCEEEEEECEEE
TLQPSIQEWFDRIHPEDKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVF
EECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEECCCCCEEEE
GPKNRVVRMAGSHTDLTNHVALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLD
CCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
CDRFKVINDSLGHAIGDQLLIEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQ
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHCCCCHHHH
VASRLNRELEKAFELQGHTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRY
HHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
VVFEAAMRDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRG
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHHHHCCCCCCC
LISPQEFIPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQAS
CCCHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
LGKQIQSILSETGVSARHLKLEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSS
HHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LSFLHNFPLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAHNLGMTAIAEGVETQAQLQWL
HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
QQHHCDCVQGYLLSKPLSAAQMQKALMQSHRVFVQPLETSTVVSA
HHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCC
>Mature Secondary Structure
MRHLDPLHIKLLLVEDDEDDYFFFEDLLDDFQSIQFDLDWADTYDKGLEAVQRHQHDIYV
CCCCCCEEEEEEEEECCCCCEEHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHCCCCEEE
FDFRLGSRTGLDLLEEVVALGHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALL
EEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHH
ERSIRYAINHTRTLVALQEREEQYNLVAQASNDGLWDWNLQTHQVYYSPRWAAIIGQAEV
HHHHHHHHHHHHHEEHHHHHHHHHCEEEECCCCCEEECCCEEEEEEECCCEEEEEECEEE
TLQPSIQEWFDRIHPEDKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVF
EECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEECCCCCEEEE
GPKNRVVRMAGSHTDLTNHVALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLD
CCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
CDRFKVINDSLGHAIGDQLLIEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQ
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHCCCCHHHH
VASRLNRELEKAFELQGHTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRY
HHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
VVFEAAMRDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRG
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHHHHCCCCCCC
LISPQEFIPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQAS
CCCHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
LGKQIQSILSETGVSARHLKLEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSS
HHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LSFLHNFPLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAHNLGMTAIAEGVETQAQLQWL
HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
QQHHCDCVQGYLLSKPLSAAQMQKALMQSHRVFVQPLETSTVVSA
HHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]