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The map label for this gene is ltrA [H]

Identifier: 158334782

GI number: 158334782

Start: 1587740

End: 1588624

Strand: Reverse

Name: ltrA [H]

Synonym: AM1_1617

Alternate gene names: 158334782

Gene position: 1588624-1587740 (Counterclockwise)

Preceding gene: 158334785

Following gene: 158334776

Centisome position: 24.43

GC content: 52.54

Gene sequence:

>885_bases
ATGGATATATTATCTCTCCGTTTATTTCTCAGGATTGCTGCCCGCAGCGGGGTCTCGGCGGCGGCGCAGGATCTTTCCCT
ATCTCCTGCCAGTGCCAGTGCCCGCCTGGTGAAGCTCGAAGAAACGTTGGGTTTTCGTCTATTCAATCGCACGACCCGAG
CTGTTTCTTTGACCACGGATGGTGAGGCATTTTTGCCCTATGCCCAGCAGATGATTGAAACCCTAGAGACGGGGTTGAGT
GCCGTCAAGGGCCAGGGGGCCGAGGCGGAAGGGGTTCTGCGAATTACCATGCCTGGCTCTTTTGGCCGGATGTATATCAT
TCCTGCCTTGGCTGAATTTCACGCCCGCCATCCTCGGGTCAGCTTGGACTTACGCCTATCGGATGAAGTCTTGGATGTGG
TGGAAGGGGCCTATGACCTAATTATCCGCAATGCCCCCTTGGCCGATAGCAGTCTGATGTTGCGAAAGCTAGCCGCTGAT
CGGCGGATTCTGGTTGCTTCTCCCACCTATCTTGAGCAGCATGGTACGCCTGCAACGCCTGATGATCTGGTGAACCATCA
ATGTGTCAGTCTGGCTGAAGTAACGAAATGGAAGTTTAAAAACGGACAGGCTATAAGCGTTCCCCACTCGTTTATGGTCA
ACGATGGGGAAGCTCTGCGTAAAATGCTGGAGCAGGGATTGGGAATTGGCATCAAGTCTGTCTGGAATGCCAGTGAAAGT
TTGAAGTCTGGGCTGTTGGTTGAGGTATTGCCAGACTTCCTACTGATGGTAGATGTTTCTATCTGGTTGCTGTACCCCAG
TCGCCGGATTATTGCTCCGAAAGTTTATGCCATGATTGATTTTTTACTGGAACGGTTCCAGCCAGTGCCGCCTTGGGAGC
GCTAG

Upstream 100 bases:

>100_bases
CCTCCTATCGAATCATTAGACCGTTATCCGCATGATAATTATTTAAATTAGAAAGATAAACAGGCTTTTAGCGAAATAAT
AATTCGGATATTTTTGATAA

Downstream 100 bases:

>100_bases
TGAGGAGAAGGCGAACCCACATAAATGAGCAAAATTAACATCTACTGCTAAGCACAAACTATTAATCAATTTTGTGAAGC
ATCAAGTCGCGTCGATTGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDILSLRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTDGEAFLPYAQQMIETLETGLS
AVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRVSLDLRLSDEVLDVVEGAYDLIIRNAPLADSSLMLRKLAAD
RRILVASPTYLEQHGTPATPDDLVNHQCVSLAEVTKWKFKNGQAISVPHSFMVNDGEALRKMLEQGLGIGIKSVWNASES
LKSGLLVEVLPDFLLMVDVSIWLLYPSRRIIAPKVYAMIDFLLERFQPVPPWER

Sequences:

>Translated_294_residues
MDILSLRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTDGEAFLPYAQQMIETLETGLS
AVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRVSLDLRLSDEVLDVVEGAYDLIIRNAPLADSSLMLRKLAAD
RRILVASPTYLEQHGTPATPDDLVNHQCVSLAEVTKWKFKNGQAISVPHSFMVNDGEALRKMLEQGLGIGIKSVWNASES
LKSGLLVEVLPDFLLMVDVSIWLLYPSRRIIAPKVYAMIDFLLERFQPVPPWER
>Mature_294_residues
MDILSLRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTDGEAFLPYAQQMIETLETGLS
AVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRVSLDLRLSDEVLDVVEGAYDLIIRNAPLADSSLMLRKLAAD
RRILVASPTYLEQHGTPATPDDLVNHQCVSLAEVTKWKFKNGQAISVPHSFMVNDGEALRKMLEQGLGIGIKSVWNASES
LKSGLLVEVLPDFLLMVDVSIWLLYPSRRIIAPKVYAMIDFLLERFQPVPPWER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=34.375, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=31.3793103448276, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=29.5774647887324, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=30.2013422818792, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=26.1324041811847, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=26.643598615917, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=28.2828282828283, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=24.3986254295533, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786448, Length=246, Percent_Identity=29.2682926829268, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=24.3137254901961, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790011, Length=262, Percent_Identity=25.5725190839695, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=149, Percent_Identity=32.2147651006711, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=25.8503401360544, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790262, Length=238, Percent_Identity=25.6302521008403, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32484; Mature: 32484

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILSLRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTD
CCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHCCCCEEEEEECC
GEAFLPYAQQMIETLETGLSAVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHCCCCCE
SLDLRLSDEVLDVVEGAYDLIIRNAPLADSSLMLRKLAADRRILVASPTYLEQHGTPATP
EEEEEECHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHCCCCCCH
DDLVNHQCVSLAEVTKWKFKNGQAISVPHSFMVNDGEALRKMLEQGLGIGIKSVWNASES
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHHCCCCCHHHHHCCHHH
LKSGLLVEVLPDFLLMVDVSIWLLYPSRRIIAPKVYAMIDFLLERFQPVPPWER
HHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDILSLRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTD
CCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHCCCCEEEEEECC
GEAFLPYAQQMIETLETGLSAVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHCCCCCE
SLDLRLSDEVLDVVEGAYDLIIRNAPLADSSLMLRKLAADRRILVASPTYLEQHGTPATP
EEEEEECHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHCCCCCCH
DDLVNHQCVSLAEVTKWKFKNGQAISVPHSFMVNDGEALRKMLEQGLGIGIKSVWNASES
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHHCCCCCHHHHHCCHHH
LKSGLLVEVLPDFLLMVDVSIWLLYPSRRIIAPKVYAMIDFLLERFQPVPPWER
HHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]