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The map label for this gene is rpoS [C]

Identifier: 158334762

GI number: 158334762

Start: 1573667

End: 1573822

Strand: Direct

Name: rpoS [C]

Synonym: AM1_1596

Alternate gene names: 158334762

Gene position: 1573667-1573822 (Clockwise)

Preceding gene: 158334761

Following gene: 158334763

Centisome position: 24.2

GC content: 44.87

Gene sequence:

>156_bases
TTGAGTCCAATTTACGATTGGTCGTCTCCGTCGCCAAGAAAGATAACAAAGCTCGAATTTCTCGTTCTGATTCAAGAAGG
CACGATTGGCCTGCGACGAAGCGTAGAGAAATTCGACCCTACCAAAGGCTATCGATTTTCTACCTATGCCTATTAG

Upstream 100 bases:

>100_bases
GCAACAGCGGACGGAACAACTCGACCAAGAGCCTACAAAATGTCTGTTTCTCAGCTTCAGACAGACCTGAAGCTAGGTCA
AACTGCCACCCGAAAAATGG

Downstream 100 bases:

>100_bases
TGGATTCGACAAACCGTAACTCACGCAATTGCCGATTAAGAGCGAACCATTCGTTTGCCAATCCATATTAATGAAAAGTT
AAGCAAGTTAAACGCCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MSPIYDWSSPSPRKITKLEFLVLIQEGTIGLRRSVEKFDPTKGYRFSTYAY

Sequences:

>Translated_51_residues
MSPIYDWSSPSPRKITKLEFLVLIQEGTIGLRRSVEKFDPTKGYRFSTYAY
>Mature_50_residues
SPIYDWSSPSPRKITKLEFLVLIQEGTIGLRRSVEKFDPTKGYRFSTYAY

Specific function: Sigma Transcription Factor Controlling A Regulon Of Genes Required For Protection Against External Stresses. Possibly, It Affects The Expression Of Kate (Catalase Hpii), Xtha (Endonuclease III), The Appabc Operon And Other Genes By Modifying The Affinity

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 (log phase) 250 (stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5974; Mature: 5843

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPIYDWSSPSPRKITKLEFLVLIQEGTIGLRRSVEKFDPTKGYRFSTYAY
CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEECC
>Mature Secondary Structure 
SPIYDWSSPSPRKITKLEFLVLIQEGTIGLRRSVEKFDPTKGYRFSTYAY
CCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA