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The map label for this gene is nolA [H]

Identifier: 158334729

GI number: 158334729

Start: 1547486

End: 1548256

Strand: Direct

Name: nolA [H]

Synonym: AM1_1563

Alternate gene names: 158334729

Gene position: 1547486-1548256 (Clockwise)

Preceding gene: 158334727

Following gene: 158334731

Centisome position: 23.79

GC content: 47.73

Gene sequence:

>771_bases
ATGCCGGAGAGAAACATCAGTCAACGGGTTTCTATGAAAGTGGGCGAATTAGCTCAACAAACTGGCGTCTCCGTGCGTAC
ATTGCACCACTACGACAAGATCGGTTTACTCTCGCCCTCTCGACGCACCGAAGCAGGATATCGACTCTATGGCGATGATG
ACATTATTCGCTTGCAGCAAATTGTCTCATTACGTCAACTTGGTTTTTCCCTAGCGCAAATCCAAGACTGCTTGAATCAG
AATGAATTTTCTCCCCATGACGTGGTGCAACTGCATCTATCCAAACTCAAAGAACACATTGAGCTACAGCAGCTATATGC
ACGGCTAGAAATCATCGCTTCTCAGCTGCAGTCTACAGAAGCAATCTCAATTCAAGACTTCCTTCAATTAATAGAGGTCA
CAAACATGATCGAGAAATACTACACCCCAGAACAGCAAGCGCAACTTCAGGCTAGACGGGAAGCTCTAGGTGAAGAGCAC
ATCCATCAAGCCGAGGCAGAATGGCAAACGCTAATTGACCAAGCCCGGACTGAAATGGCAAAAGGCACGAATCCAGCCAG
TGAAGCCATGCAAGTCATCGTTCAAAAATGGCAATCACTGATCCAACAGTTCACTGGGGGCGATTCAGGTATTGCCTCAT
CTTTACAGTCGATGTATCAACAAGAGGGGGCAGAGGTAGCGAGTAGAGGCATGGTGGATCCTGAGCTGATGGAATTTATG
GGGAAAGCGATGGCAGCCACCAAAGGCTCGGATCATACTGGCCAGGTTTAA

Upstream 100 bases:

>100_bases
CTTCCTAGCGCCACCTCACATTTTTCCGTTTTCCCCCTTGACTCTCACCCTACGTGAGGTTTCTATCATGGAACCATTCA
CACATGAGGATTGCTTCCCA

Downstream 100 bases:

>100_bases
TCGACGGGGTGAACAGTATTGCCATTGCCTGAATCGGCCATCGCTAAATGAGGGGGGTTCACCAAGCGATATCCATATCA
CAGAAATCTTAAGCCATCAG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPERNISQRVSMKVGELAQQTGVSVRTLHHYDKIGLLSPSRRTEAGYRLYGDDDIIRLQQIVSLRQLGFSLAQIQDCLNQ
NEFSPHDVVQLHLSKLKEHIELQQLYARLEIIASQLQSTEAISIQDFLQLIEVTNMIEKYYTPEQQAQLQARREALGEEH
IHQAEAEWQTLIDQARTEMAKGTNPASEAMQVIVQKWQSLIQQFTGGDSGIASSLQSMYQQEGAEVASRGMVDPELMEFM
GKAMAATKGSDHTGQV

Sequences:

>Translated_256_residues
MPERNISQRVSMKVGELAQQTGVSVRTLHHYDKIGLLSPSRRTEAGYRLYGDDDIIRLQQIVSLRQLGFSLAQIQDCLNQ
NEFSPHDVVQLHLSKLKEHIELQQLYARLEIIASQLQSTEAISIQDFLQLIEVTNMIEKYYTPEQQAQLQARREALGEEH
IHQAEAEWQTLIDQARTEMAKGTNPASEAMQVIVQKWQSLIQQFTGGDSGIASSLQSMYQQEGAEVASRGMVDPELMEFM
GKAMAATKGSDHTGQV
>Mature_255_residues
PERNISQRVSMKVGELAQQTGVSVRTLHHYDKIGLLSPSRRTEAGYRLYGDDDIIRLQQIVSLRQLGFSLAQIQDCLNQN
EFSPHDVVQLHLSKLKEHIELQQLYARLEIIASQLQSTEAISIQDFLQLIEVTNMIEKYYTPEQQAQLQARREALGEEHI
HQAEAEWQTLIDQARTEMAKGTNPASEAMQVIVQKWQSLIQQFTGGDSGIASSLQSMYQQEGAEVASRGMVDPELMEFMG
KAMAATKGSDHTGQV

Specific function: Involved in genotype-specific nodulation of soybeans [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 28840; Mature: 28709

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPERNISQRVSMKVGELAQQTGVSVRTLHHYDKIGLLSPSRRTEAGYRLYGDDDIIRLQQ
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHH
IVSLRQLGFSLAQIQDCLNQNEFSPHDVVQLHLSKLKEHIELQQLYARLEIIASQLQSTE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AISIQDFLQLIEVTNMIEKYYTPEQQAQLQARREALGEEHIHQAEAEWQTLIDQARTEMA
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTNPASEAMQVIVQKWQSLIQQFTGGDSGIASSLQSMYQQEGAEVASRGMVDPELMEFM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
GKAMAATKGSDHTGQV
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PERNISQRVSMKVGELAQQTGVSVRTLHHYDKIGLLSPSRRTEAGYRLYGDDDIIRLQQ
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHH
IVSLRQLGFSLAQIQDCLNQNEFSPHDVVQLHLSKLKEHIELQQLYARLEIIASQLQSTE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AISIQDFLQLIEVTNMIEKYYTPEQQAQLQARREALGEEHIHQAEAEWQTLIDQARTEMA
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTNPASEAMQVIVQKWQSLIQQFTGGDSGIASSLQSMYQQEGAEVASRGMVDPELMEFM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
GKAMAATKGSDHTGQV
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]