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The map label for this gene is rcaC [H]

Identifier: 158334669

GI number: 158334669

Start: 1490205

End: 1490882

Strand: Direct

Name: rcaC [H]

Synonym: AM1_1501

Alternate gene names: 158334669

Gene position: 1490205-1490882 (Clockwise)

Preceding gene: 158334668

Following gene: 158334670

Centisome position: 22.91

GC content: 50.15

Gene sequence:

>678_bases
ATGAGACTTTTACTGGTAGAAGATGACTACCCACTGGCAGCCGTTTTTGCGGAAGCCCTGGAAGATTCTGGCTATATCGT
CGATGTCGTCCATGATGGAGAAGCCGGTTGGTATCAAGCAACGGAATCAGAATATGGCATTATTCTGCTAGATTGCATGC
TGCCAAAGCTTGATGGTTTGGGGCTATGCCAGCGATTACGTGCCCATGGCTACACCATTCCCATCTTGATGATGACGGCC
CGAGATGCCAGTACAGATAAAGTTCTGGGTTTAGATGCAGGGGCTGACGACTATCTGGTTAAGCCCGTCGATTTACCAGA
GTTGTTAGCTCGGATACGTGCCGTCCTCAGGCGAGGCACAGCAACCCCTTCCCCCTTGTTATATTGGGGCGATCTCTGTC
TCCATCCCTTAAACCACGAAGTGACCTATGCCAGTCACCCCGTTAAGTTAACCCCCACTGAATTTTCACTCCTAGAACTG
TTCCTGCGCAGTGGATTACGGGTACTTAGCCGCAAAATTATTATTAGCCATCTTTGGGATTTAGAAGATCCGCCTGGGGA
AGAAACCGTTAAAGCCCACATCAAAGGGTTGCGGCAAAAACTGACAGAAGCCGGCGCACCTAAGACGTTCATCGAAACAA
TTCGGGGGGTTGGCTACCGGATGCAGCCGATTCCGTAA

Upstream 100 bases:

>100_bases
GTACCACCTTTACGGTACGATTGCCGATCCAGACCAATCGACACCAGGCTGATCCACTCATTAGACAGACCGTAGCTTAG
GCAGTAATGGTAGGGGGGAC

Downstream 100 bases:

>100_bases
ATCTTCCCGCTTTCTTCCCGCTTTCTCCCTTTTCTCTTTACTCTCTCCAAATATATTGAGACTAGGTCACACCAAAGTGG
CTTTTCGTTTCACCACGCAC

Product: two-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGLGLCQRLRAHGYTIPILMMTA
RDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGTATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLEL
FLRSGLRVLSRKIIISHLWDLEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQPIP

Sequences:

>Translated_225_residues
MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGLGLCQRLRAHGYTIPILMMTA
RDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGTATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLEL
FLRSGLRVLSRKIIISHLWDLEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQPIP
>Mature_225_residues
MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGLGLCQRLRAHGYTIPILMMTA
RDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGTATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLEL
FLRSGLRVLSRKIIISHLWDLEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQPIP

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=38.1165919282511, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=39.7260273972603, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=38.3561643835616, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=39.5454545454545, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=36.7713004484305, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI1790860, Length=220, Percent_Identity=35.4545454545455, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=34.6666666666667, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=34.061135371179, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=36.4035087719298, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=32.4200913242009, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=34.2342342342342, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787229, Length=209, Percent_Identity=31.1004784688995, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI145693140, Length=234, Percent_Identity=29.0598290598291, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=27.6315789473684, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=30.7017543859649, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=28.0373831775701, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI145693157, Length=104, Percent_Identity=33.6538461538462, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25041; Mature: 25041

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGL
CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCCCCEEEEEECCCCCCCH
GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT
HHHHHHHHCCCEEEEEEEEECCCCCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHCCC
ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD
CCCCCEEEEHHHHHCCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQPIP
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCC
>Mature Secondary Structure
MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGL
CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCCCCEEEEEECCCCCCCH
GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT
HHHHHHHHCCCEEEEEEEEECCCCCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHCCC
ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD
CCCCCEEEEHHHHHCCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQPIP
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]