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The map label for this gene is ybeY [C]

Identifier: 158334602

GI number: 158334602

Start: 1425171

End: 1425701

Strand: Reverse

Name: ybeY [C]

Synonym: AM1_1432

Alternate gene names: 158334602

Gene position: 1425701-1425171 (Counterclockwise)

Preceding gene: 158334603

Following gene: 158334601

Centisome position: 21.92

GC content: 49.91

Gene sequence:

>531_bases
ATGCAAGTTGACGTCCATATTCAGTGGGATCTTGAAGACAGAGCCATCCCATCTTCGTTAGTAGAGAATGTGCTCAAACA
AGCCCATCAAATTACAGCTGTGACCTGGCAATCTTGGTTTCAGCACTGGTTTGAGCACTTGCAGCCTAGTATTTCTCCGA
TCCAAACCTATGAATTGAGCCTACTGCTAACGGATGACGCGGCGATCCAGAATTTGAATGCAACCTATCGGCACCTAGAT
CGCCCCACAGATGTGCTGGCCTTTGCAACCCTTGACTTAACCGAACAGCCGACAGACCTGTGGTCAGAGATGCCTGTGGA
ACTCGGCGACATTATCATTTCGGTAGAGACTGCAGCGCAGCAAGCACAAGAGCAACAGCATCCCCTACCGCAAGAGCTAG
CTTGGTTAGCGACCCATGGATTGTTGCATCTATTGGGGTGGGATCACCCGACCCCTGAACGCCTCCAGGATATGTTGGCG
CAGCAACAATTATTAATCAATCTCACGAATGTATCGGCAGCAACTAGCTAG

Upstream 100 bases:

>100_bases
CAGACGGTCGTTGCTGGAATTTGGACTAACCACGGTGGGGGTATTAGCCTTGTTGATTGGGCTGTCCTATCTGACTCGTT
AGCGAATCGTCTCAAACCAC

Downstream 100 bases:

>100_bases
ACCTAGAAGAGTTTGTTAGAACTGTGGGTAACCTAAAACATAGTGAGTGAGAAATACTTCTCTGATTAAGCAATAGACAA
TTTAATCCTTGATTCAGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQVDVHIQWDLEDRAIPSSLVENVLKQAHQITAVTWQSWFQHWFEHLQPSISPIQTYELSLLLTDDAAIQNLNATYRHLD
RPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVETAAQQAQEQQHPLPQELAWLATHGLLHLLGWDHPTPERLQDMLA
QQQLLINLTNVSAATS

Sequences:

>Translated_176_residues
MQVDVHIQWDLEDRAIPSSLVENVLKQAHQITAVTWQSWFQHWFEHLQPSISPIQTYELSLLLTDDAAIQNLNATYRHLD
RPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVETAAQQAQEQQHPLPQELAWLATHGLLHLLGWDHPTPERLQDMLA
QQQLLINLTNVSAATS
>Mature_176_residues
MQVDVHIQWDLEDRAIPSSLVENVLKQAHQITAVTWQSWFQHWFEHLQPSISPIQTYELSLLLTDDAAIQNLNATYRHLD
RPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVETAAQQAQEQQHPLPQELAWLATHGLLHLLGWDHPTPERLQDMLA
QQQLLINLTNVSAATS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=118, Percent_Identity=36.4406779661017, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ACAM1 (B0C7R9)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001515774.1
- ProteinModelPortal:   B0C7R9
- SMR:   B0C7R9
- GeneID:   5680252
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_1432
- HOGENOM:   HBG734136
- OMA:   VELAWLA
- BioCyc:   AMAR329726:AM1_1432-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 20050; Mature: 20050

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVDVHIQWDLEDRAIPSSLVENVLKQAHQITAVTWQSWFQHWFEHLQPSISPIQTYELS
CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LLLTDDAAIQNLNATYRHLDRPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVETAAQ
EEEECHHHHHHCCHHHHHCCCCHHHHHEEEECCCCCCHHHHHHCCCCHHHEEEEHHHHHH
QAQEQQHPLPQELAWLATHGLLHLLGWDHPTPERLQDMLAQQQLLINLTNVSAATS
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQVDVHIQWDLEDRAIPSSLVENVLKQAHQITAVTWQSWFQHWFEHLQPSISPIQTYELS
CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LLLTDDAAIQNLNATYRHLDRPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVETAAQ
EEEECHHHHHHCCHHHHHCCCCHHHHHEEEECCCCCCHHHHHHCCCCHHHEEEEHHHHHH
QAQEQQHPLPQELAWLATHGLLHLLGWDHPTPERLQDMLAQQQLLINLTNVSAATS
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA