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The map label for this gene is ycdC [C]

Identifier: 158334510

GI number: 158334510

Start: 1316153

End: 1316776

Strand: Reverse

Name: ycdC [C]

Synonym: AM1_1334

Alternate gene names: 158334510

Gene position: 1316776-1316153 (Counterclockwise)

Preceding gene: 158334513

Following gene: 158334509

Centisome position: 20.25

GC content: 48.88

Gene sequence:

>624_bases
ATGATTGTTAGCCAAAAAACAGAAGCTCGGCGAAAGAGTCCGAAGCGAGTAGCCGTTATCGAGGCTGCAACCGAAGAATT
TTGGTCACATGGATTTTCGGGAACGAGTATGGACCGAATTGCTAAGGTGGCAAATGTATCGAAACGAACGGTCTATGATC
ACTTCCCTAGCAAAGACGACCTCTTCCAGGCAATTATCGATGAGATATTGGAGCGAGTGGGAGAGATGCCATCCCACGAG
TATTCTGCAGAGAAGCCTTTGGATGAACAGTTGCTTGCAATTGGGAAAACGTTTGCTATGACCATCACTGGCAGGGACTT
CATGAAACTGTCGCGGGTGGTGATTTCTCGATTCATTCAGGCCCCTGAGTGGGCACACAATACCCTTAAGGCACATGCCC
GGCTGAGGCAGGACATGATTACTTTCTTTAAGGCAGGGACTAAGGATGGCCGCTTAAAGATTAGCAACCCAGAGAAGGCT
GCCGCTCAGTTCTGTGGGTTGATTAAGGAAATCGCATTCTGGCCAGAGTTGATGGCAGGACAGAAGCCTATCTCAGCACG
GGAACGGAATTTGGCTGTCAAGGCTGCCGTGGAAATGTTTTTGGACCATTACCAGACATCCTAA

Upstream 100 bases:

>100_bases
TATAATGGGAGAGATTTTGACCGCCTCTAATTTTTTAAGATGCACTACACTGTATAGTGTAAATAAGCCGCTTTAGAGTT
TAGAAATAGGGGCCACAAAA

Downstream 100 bases:

>100_bases
ATGTCCAGGAACTCATAAGTTGTGTTGAACCTACGCGAACAAGCGAGGGGACTCGAACAGAAAGTTGGAGTTTTTGAGAT
AGAGTCTCCCCTCATTCGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcription Regulator Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TetR-Type Transcriptional Regulator; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MIVSQKTEARRKSPKRVAVIEAATEEFWSHGFSGTSMDRIAKVANVSKRTVYDHFPSKDDLFQAIIDEILERVGEMPSHE
YSAEKPLDEQLLAIGKTFAMTITGRDFMKLSRVVISRFIQAPEWAHNTLKAHARLRQDMITFFKAGTKDGRLKISNPEKA
AAQFCGLIKEIAFWPELMAGQKPISARERNLAVKAAVEMFLDHYQTS

Sequences:

>Translated_207_residues
MIVSQKTEARRKSPKRVAVIEAATEEFWSHGFSGTSMDRIAKVANVSKRTVYDHFPSKDDLFQAIIDEILERVGEMPSHE
YSAEKPLDEQLLAIGKTFAMTITGRDFMKLSRVVISRFIQAPEWAHNTLKAHARLRQDMITFFKAGTKDGRLKISNPEKA
AAQFCGLIKEIAFWPELMAGQKPISARERNLAVKAAVEMFLDHYQTS
>Mature_207_residues
MIVSQKTEARRKSPKRVAVIEAATEEFWSHGFSGTSMDRIAKVANVSKRTVYDHFPSKDDLFQAIIDEILERVGEMPSHE
YSAEKPLDEQLLAIGKTFAMTITGRDFMKLSRVVISRFIQAPEWAHNTLKAHARLRQDMITFFKAGTKDGRLKISNPEKA
AAQFCGLIKEIAFWPELMAGQKPISARERNLAVKAAVEMFLDHYQTS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23458; Mature: 23458

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVSQKTEARRKSPKRVAVIEAATEEFWSHGFSGTSMDRIAKVANVSKRTVYDHFPSKDD
CCCCCCHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
LFQAIIDEILERVGEMPSHEYSAEKPLDEQLLAIGKTFAMTITGRDFMKLSRVVISRFIQ
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHC
APEWAHNTLKAHARLRQDMITFFKAGTKDGRLKISNPEKAAAQFCGLIKEIAFWPELMAG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
QKPISARERNLAVKAAVEMFLDHYQTS
CCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIVSQKTEARRKSPKRVAVIEAATEEFWSHGFSGTSMDRIAKVANVSKRTVYDHFPSKDD
CCCCCCHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
LFQAIIDEILERVGEMPSHEYSAEKPLDEQLLAIGKTFAMTITGRDFMKLSRVVISRFIQ
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHC
APEWAHNTLKAHARLRQDMITFFKAGTKDGRLKISNPEKAAAQFCGLIKEIAFWPELMAG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
QKPISARERNLAVKAAVEMFLDHYQTS
CCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA