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The map label for this gene is yjdA [C]

Identifier: 158334442

GI number: 158334442

Start: 1250191

End: 1252239

Strand: Direct

Name: yjdA [C]

Synonym: AM1_1263

Alternate gene names: 158334442

Gene position: 1250191-1252239 (Clockwise)

Preceding gene: 158334439

Following gene: 158334449

Centisome position: 19.22

GC content: 48.8

Gene sequence:

>2049_bases
TTGTCCGCCGCGTCCTTAGCTCAGTTAGATCAAGCCCAACATTCACGCCAGAAAGCTGCCAATCATCTGGAAGCCATGGC
AGAGACCCTATCCGCTGCAGAAAAGGAAGGGTCTACCGCCTCCGGCGAACTTAGCCTAGCCACGCAAGTGGAATCCCTTC
GGAACGTGGCAGGCAACCTGAAGCAAGGGATCTTTCGGTTGGTGGTGTTGGGCGATCTGAAGCGGGGGAAAAGTACGCTC
CTCAATTCCCTATTGGGCGAGCGATTATTGCCTAGTGATGTCAACCCCTGTACGGCTGTATTGACGGTGCTCAAATATGG
TCCCCAAAAGCAAGTCACCATCCACCATCTTGACGATACGGCCCCTGAAAAAATTGCCTTAGAGGACTTTAAGCAGATTT
ACACCATTGATCCTGAAGAAGCCAAAGCGTTGGCCTCCAAAGACCAAGCAGCCTTTCCCAATGTCAGCCATGCCGAGATT
GAGTATCCTATTCCTCTGTTGCAACAAGGCCTAGAGCTGATTGATACCCCAGGACTGAATGATACAGAAGCCCGGAATCA
GCTGGTCTTTAATTTTTTGCAGGATTGCCATGCCGTGCTGTTTGTAATGGATGCGACCCAGCCCTGCACCTTAGATGAGC
GCCGATACCTGCAAAACACCCTGAAGGATCGGGGTATCCCCATCTTTTTCTTGATTAATGCCTGGGATAAAGTTCAAAGT
AATTTGATCGATCCGGATGATCGAGAGGCCCTGACCTCAGCAGAGGCTAGACTGCGAGAGGTGTTTCGCACCCACTTAGC
GGACTATTGCCCCGATCAATATGACCAGCGGGTGTTTGAAGTCTCGGGACTGAAGGCGTTGCGATCGCAACTCCAAAACG
CCCCGGAAGCCCTCGCCCAGTCAGGTGTGCCCGTCTTTCTGGACAGTTTGTTCGACTTTCTGGCCAACGATCGCATCCAG
GCCGAACTAGACTATGCTCTTCAAAAAGCCCAGATGACCCATAAGCAGGTGTGGGCAGCCGTTTCTCGACGGTTACCGTT
ACTGGATGAAGATCTGGATCAACTCAAACAGAAGCTGGCCTCCGTTCAGACGGATTTTGAGCAACTGCAAGCCATTCGGG
ATGACTTTCAAACGAAAATTCGCCAAACTCGCGATCAAGAATCTCAGGCCATTGCGGATTCCTTTAAGACCTATATTCTC
AAACTAGAAGCTACCTTTGACGAGGATTTTGTCGCAGCCCAACCGGATTTGGATTTTCTAGAGTTTCTAGATAAGAACAA
TCGGGCCATGTTTTACACCTCCTTTAAGCGAGCCTTTGAACGCTATATGAATGACCGTTTGGCAGCTTGGGAATTTATCG
CTAAACAGGATATTAGCCGGGCCTTTTCTGAACTTAATGAAGCGGCGGATGAATATCGAGTGGCCTATGAACAAGTCGTC
GAGGTAATGAACGACAAGCTTTTGGGCAATCGCTTCTATGCAGCAGGGCATCGTTATAACCCCAAAGAAGTCCAAATTTG
GACCGACATCCTCAAGGATGCATTTGAAGCCATGCCTGACAATATGAATGGGGCGGTTGGACAATTCAATATGTTTTGGC
AGGGCGTGTTGCAATCGGCTTTAGCCTATGTGGTGATTGTGATTGCATTGCAAATTATCGGCTTGGTATTTTCCTCCCTT
TTTCTCAATGTCTTTGCCGTGCTGTTGGTGGGAGCTGGCGTTTTTGTGGGGCAAGCAGAATATGTGCGCCAAGAGTTCTT
AAACGCAACCCGTAAGGAATTTGCCAAATATCTCCCCCAAATTGCCGAAGAGCAATGGCAACCCATTCATCAAGCCGTCC
AGCGATGCTTTGACACCTATGAAATCGAAGTGATTGAGCGGATTAATCAGGATATTGCCAGTCGGCAAGGGGAACTGAAT
AACCTGATCGCCCAAAAAGAATCCCATTCAATCCAGGTGGAGCAAGAAAGTCAACGACTTCAAACGTTAGAAACGTCTCT
AGGAGAGATGGTTCAGAAAATGGAAGAGGACTGTCAGCTAAAAGATTGA

Upstream 100 bases:

>100_bases
TCGATTTCGTTCCAGTTTTTTGTGCGGTAGCTATGATGGTGGAGATAAAGTTTAAAATCTCACCGCCACATTTATGAGCA
CTTTTCTTGATCTCACGCAG

Downstream 100 bases:

>100_bases
TGCGCTCTATTGAAGGGAAATTGGACTGATGTAGAAAGCCTGTTATCCCTGACTGCTATACATCTGGGAGATGGGCAAGC
GTCTTGGATTATTCCATCTG

Product: dynamin-like protein

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 682; Mature: 681

Protein sequence:

>682_residues
MSAASLAQLDQAQHSRQKAANHLEAMAETLSAAEKEGSTASGELSLATQVESLRNVAGNLKQGIFRLVVLGDLKRGKSTL
LNSLLGERLLPSDVNPCTAVLTVLKYGPQKQVTIHHLDDTAPEKIALEDFKQIYTIDPEEAKALASKDQAAFPNVSHAEI
EYPIPLLQQGLELIDTPGLNDTEARNQLVFNFLQDCHAVLFVMDATQPCTLDERRYLQNTLKDRGIPIFFLINAWDKVQS
NLIDPDDREALTSAEARLREVFRTHLADYCPDQYDQRVFEVSGLKALRSQLQNAPEALAQSGVPVFLDSLFDFLANDRIQ
AELDYALQKAQMTHKQVWAAVSRRLPLLDEDLDQLKQKLASVQTDFEQLQAIRDDFQTKIRQTRDQESQAIADSFKTYIL
KLEATFDEDFVAAQPDLDFLEFLDKNNRAMFYTSFKRAFERYMNDRLAAWEFIAKQDISRAFSELNEAADEYRVAYEQVV
EVMNDKLLGNRFYAAGHRYNPKEVQIWTDILKDAFEAMPDNMNGAVGQFNMFWQGVLQSALAYVVIVIALQIIGLVFSSL
FLNVFAVLLVGAGVFVGQAEYVRQEFLNATRKEFAKYLPQIAEEQWQPIHQAVQRCFDTYEIEVIERINQDIASRQGELN
NLIAQKESHSIQVEQESQRLQTLETSLGEMVQKMEEDCQLKD

Sequences:

>Translated_682_residues
MSAASLAQLDQAQHSRQKAANHLEAMAETLSAAEKEGSTASGELSLATQVESLRNVAGNLKQGIFRLVVLGDLKRGKSTL
LNSLLGERLLPSDVNPCTAVLTVLKYGPQKQVTIHHLDDTAPEKIALEDFKQIYTIDPEEAKALASKDQAAFPNVSHAEI
EYPIPLLQQGLELIDTPGLNDTEARNQLVFNFLQDCHAVLFVMDATQPCTLDERRYLQNTLKDRGIPIFFLINAWDKVQS
NLIDPDDREALTSAEARLREVFRTHLADYCPDQYDQRVFEVSGLKALRSQLQNAPEALAQSGVPVFLDSLFDFLANDRIQ
AELDYALQKAQMTHKQVWAAVSRRLPLLDEDLDQLKQKLASVQTDFEQLQAIRDDFQTKIRQTRDQESQAIADSFKTYIL
KLEATFDEDFVAAQPDLDFLEFLDKNNRAMFYTSFKRAFERYMNDRLAAWEFIAKQDISRAFSELNEAADEYRVAYEQVV
EVMNDKLLGNRFYAAGHRYNPKEVQIWTDILKDAFEAMPDNMNGAVGQFNMFWQGVLQSALAYVVIVIALQIIGLVFSSL
FLNVFAVLLVGAGVFVGQAEYVRQEFLNATRKEFAKYLPQIAEEQWQPIHQAVQRCFDTYEIEVIERINQDIASRQGELN
NLIAQKESHSIQVEQESQRLQTLETSLGEMVQKMEEDCQLKD
>Mature_681_residues
SAASLAQLDQAQHSRQKAANHLEAMAETLSAAEKEGSTASGELSLATQVESLRNVAGNLKQGIFRLVVLGDLKRGKSTLL
NSLLGERLLPSDVNPCTAVLTVLKYGPQKQVTIHHLDDTAPEKIALEDFKQIYTIDPEEAKALASKDQAAFPNVSHAEIE
YPIPLLQQGLELIDTPGLNDTEARNQLVFNFLQDCHAVLFVMDATQPCTLDERRYLQNTLKDRGIPIFFLINAWDKVQSN
LIDPDDREALTSAEARLREVFRTHLADYCPDQYDQRVFEVSGLKALRSQLQNAPEALAQSGVPVFLDSLFDFLANDRIQA
ELDYALQKAQMTHKQVWAAVSRRLPLLDEDLDQLKQKLASVQTDFEQLQAIRDDFQTKIRQTRDQESQAIADSFKTYILK
LEATFDEDFVAAQPDLDFLEFLDKNNRAMFYTSFKRAFERYMNDRLAAWEFIAKQDISRAFSELNEAADEYRVAYEQVVE
VMNDKLLGNRFYAAGHRYNPKEVQIWTDILKDAFEAMPDNMNGAVGQFNMFWQGVLQSALAYVVIVIALQIIGLVFSSLF
LNVFAVLLVGAGVFVGQAEYVRQEFLNATRKEFAKYLPQIAEEQWQPIHQAVQRCFDTYEIEVIERINQDIASRQGELNN
LIAQKESHSIQVEQESQRLQTLETSLGEMVQKMEEDCQLKD

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. [C]

COG id: COG0699

COG function: function code R; Predicted GTPases (dynamin-related)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.genitalium MG148 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001401 [H]

Pfam domain/function: PF00350 Dynamin_N [H]

EC number: NA

Molecular weight: Translated: 77431; Mature: 77300

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAASLAQLDQAQHSRQKAANHLEAMAETLSAAEKEGSTASGELSLATQVESLRNVAGNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KQGIFRLVVLGDLKRGKSTLLNSLLGERLLPSDVNPCTAVLTVLKYGPQKQVTIHHLDDT
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC
APEKIALEDFKQIYTIDPEEAKALASKDQAAFPNVSHAEIEYPIPLLQQGLELIDTPGLN
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCC
DTEARNQLVFNFLQDCHAVLFVMDATQPCTLDERRYLQNTLKDRGIPIFFLINAWDKVQS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
NLIDPDDREALTSAEARLREVFRTHLADYCPDQYDQRVFEVSGLKALRSQLQNAPEALAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGVPVFLDSLFDFLANDRIQAELDYALQKAQMTHKQVWAAVSRRLPLLDEDLDQLKQKLA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SVQTDFEQLQAIRDDFQTKIRQTRDQESQAIADSFKTYILKLEATFDEDFVAAQPDLDFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHH
EFLDKNNRAMFYTSFKRAFERYMNDRLAAWEFIAKQDISRAFSELNEAADEYRVAYEQVV
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVMNDKLLGNRFYAAGHRYNPKEVQIWTDILKDAFEAMPDNMNGAVGQFNMFWQGVLQSA
HHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LAYVVIVIALQIIGLVFSSLFLNVFAVLLVGAGVFVGQAEYVRQEFLNATRKEFAKYLPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAEEQWQPIHQAVQRCFDTYEIEVIERINQDIASRQGELNNLIAQKESHSIQVEQESQRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEHHHHHHH
QTLETSLGEMVQKMEEDCQLKD
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAASLAQLDQAQHSRQKAANHLEAMAETLSAAEKEGSTASGELSLATQVESLRNVAGNL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KQGIFRLVVLGDLKRGKSTLLNSLLGERLLPSDVNPCTAVLTVLKYGPQKQVTIHHLDDT
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC
APEKIALEDFKQIYTIDPEEAKALASKDQAAFPNVSHAEIEYPIPLLQQGLELIDTPGLN
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCC
DTEARNQLVFNFLQDCHAVLFVMDATQPCTLDERRYLQNTLKDRGIPIFFLINAWDKVQS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
NLIDPDDREALTSAEARLREVFRTHLADYCPDQYDQRVFEVSGLKALRSQLQNAPEALAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGVPVFLDSLFDFLANDRIQAELDYALQKAQMTHKQVWAAVSRRLPLLDEDLDQLKQKLA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SVQTDFEQLQAIRDDFQTKIRQTRDQESQAIADSFKTYILKLEATFDEDFVAAQPDLDFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHH
EFLDKNNRAMFYTSFKRAFERYMNDRLAAWEFIAKQDISRAFSELNEAADEYRVAYEQVV
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVMNDKLLGNRFYAAGHRYNPKEVQIWTDILKDAFEAMPDNMNGAVGQFNMFWQGVLQSA
HHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LAYVVIVIALQIIGLVFSSLFLNVFAVLLVGAGVFVGQAEYVRQEFLNATRKEFAKYLPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAEEQWQPIHQAVQRCFDTYEIEVIERINQDIASRQGELNNLIAQKESHSIQVEQESQRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEHHHHHHH
QTLETSLGEMVQKMEEDCQLKD
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]