Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 158334386

GI number: 158334386

Start: 1188989

End: 1189603

Strand: Reverse

Name: rpoE [H]

Synonym: AM1_1207

Alternate gene names: 158334386

Gene position: 1189603-1188989 (Counterclockwise)

Preceding gene: 158334387

Following gene: 158334385

Centisome position: 18.29

GC content: 49.43

Gene sequence:

>615_bases
ATGCTTTTGAAAGTTCCCCAACCCAATCCATCCTCAGAGGAGAACCGCCCCGTTCCCTCTTCTCAATATGCTGATATCGC
TGACCTGGTTGCAGCGATTAAGCGACAGGAGTTAGACGCCCTTGAATATTTGTTTGACCAGTATTCCAGTTTGGTTTATA
CCCTGGCTTATAAAATTTTGGGCAATTCCTCTGAAGCGGAAGACTTGATGCAAGAGATCTTTCTAGGGGTGTGGGAACGC
TGTACTTACAATCCCAGTCGGGGCAGCTTATCGAGCTTTTTGGCGACAGTGACTCGGTCCAGGGCCATCGATCGACTGCG
AATGAAGGGAAATCGGCGTCGTATTTTGTCCCAGTGGCAGCAAAGTTTGTCCCCTAATCCTTCTCCGACGCCCTTGGACC
ATGCCAGTCAGTCCGAGAAACGCCAAGCCCTCCAGCAGGCTTTAACAGAACTGCCGGAAGAGTATCGTCAAGTTTTGGAA
CTCAGTTATTTCGGGGGATATAGTCAATCTCAAATTGCCGAGCAATTGAACAAGCCCTTGGGCACGGTCAAAACCTGGGC
AAGGAAAGGATTGATCCAACTTCGCCAGTCGCTACGAACGCAAATGGAGCTTTAA

Upstream 100 bases:

>100_bases
AGAGGAGCCATTGGATGTGGTTCAAAAAGATGGGGCGATACCCACATCTGATCGCAGACCTGACTCGTATATAGAATAAG
TGCAATGATGCTGCGGGCAG

Downstream 100 bases:

>100_bases
TCTTATGGTCGATCCAACCCCCCATCACCGATTTGAAGAACTTGCGGCGGGCTATGTGCTGGGCAACCTCGACTCTGAAG
AGATGGCTGAGTTTCAGCAG

Product: RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MLLKVPQPNPSSEENRPVPSSQYADIADLVAAIKRQELDALEYLFDQYSSLVYTLAYKILGNSSEAEDLMQEIFLGVWER
CTYNPSRGSLSSFLATVTRSRAIDRLRMKGNRRRILSQWQQSLSPNPSPTPLDHASQSEKRQALQQALTELPEEYRQVLE
LSYFGGYSQSQIAEQLNKPLGTVKTWARKGLIQLRQSLRTQMEL

Sequences:

>Translated_204_residues
MLLKVPQPNPSSEENRPVPSSQYADIADLVAAIKRQELDALEYLFDQYSSLVYTLAYKILGNSSEAEDLMQEIFLGVWER
CTYNPSRGSLSSFLATVTRSRAIDRLRMKGNRRRILSQWQQSLSPNPSPTPLDHASQSEKRQALQQALTELPEEYRQVLE
LSYFGGYSQSQIAEQLNKPLGTVKTWARKGLIQLRQSLRTQMEL
>Mature_204_residues
MLLKVPQPNPSSEENRPVPSSQYADIADLVAAIKRQELDALEYLFDQYSSLVYTLAYKILGNSSEAEDLMQEIFLGVWER
CTYNPSRGSLSSFLATVTRSRAIDRLRMKGNRRRILSQWQQSLSPNPSPTPLDHASQSEKRQALQQALTELPEEYRQVLE
LSYFGGYSQSQIAEQLNKPLGTVKTWARKGLIQLRQSLRTQMEL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 23296; Mature: 23296

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKVPQPNPSSEENRPVPSSQYADIADLVAAIKRQELDALEYLFDQYSSLVYTLAYKIL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNSSEAEDLMQEIFLGVWERCTYNPSRGSLSSFLATVTRSRAIDRLRMKGNRRRILSQWQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QSLSPNPSPTPLDHASQSEKRQALQQALTELPEEYRQVLELSYFGGYSQSQIAEQLNKPL
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
GTVKTWARKGLIQLRQSLRTQMEL
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLKVPQPNPSSEENRPVPSSQYADIADLVAAIKRQELDALEYLFDQYSSLVYTLAYKIL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNSSEAEDLMQEIFLGVWERCTYNPSRGSLSSFLATVTRSRAIDRLRMKGNRRRILSQWQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QSLSPNPSPTPLDHASQSEKRQALQQALTELPEEYRQVLELSYFGGYSQSQIAEQLNKPL
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
GTVKTWARKGLIQLRQSLRTQMEL
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA