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The map label for this gene is psbE [H]

Identifier: 158334311

GI number: 158334311

Start: 1103795

End: 1104067

Strand: Reverse

Name: psbE [H]

Synonym: AM1_1130

Alternate gene names: 158334311

Gene position: 1104067-1103795 (Counterclockwise)

Preceding gene: 158334313

Following gene: 158334310

Centisome position: 16.98

GC content: 41.39

Gene sequence:

>273_bases
ATGGCCGGTGTAACAGGTGAGCGCCCGTTTGGTGAGATTATCACCGATTTCTCTTTCTGGAAGCTCCACGTTATTAATAT
TCCAGCTATTTTTATATCAGGATGGCTCTTTGTCAGTTCTGGGCTAGCATACGATGTTTTTGGAACGCCCCATCCAAATG
AATATTATTCTCAATCTGAGTCTCAAATACAAATTGTGACGGATCGGTATGCCGGTAAACAGCAAATCGATGATTTTCGC
AATCTTAGTCCAAGTCTTGATACCAACAATTAG

Upstream 100 bases:

>100_bases
CTCTAAATGAGAACAGAAATTATCTCTTGAATTATTGATAATTAATTGCAATAATAAGTCTGTGAATAAGAATTATTCTC
AACTAAGTTAGGAGATGCTT

Downstream 100 bases:

>100_bases
GAGGCATTCGATATGACGGCAAGAACTCAGCTCCAGCGACCTCCCCAAAGGAAATATCCTATCTATACCGTGCGCTGGTT
GGCGGTCCACACATTGGGTG

Product: cytochrome b559 subunit alpha

Products: NA

Alternate protein names: PSII reaction center subunit V [H]

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MAGVTGERPFGEIITDFSFWKLHVINIPAIFISGWLFVSSGLAYDVFGTPHPNEYYSQSESQIQIVTDRYAGKQQIDDFR
NLSPSLDTNN

Sequences:

>Translated_90_residues
MAGVTGERPFGEIITDFSFWKLHVINIPAIFISGWLFVSSGLAYDVFGTPHPNEYYSQSESQIQIVTDRYAGKQQIDDFR
NLSPSLDTNN
>Mature_89_residues
AGVTGERPFGEIITDFSFWKLHVINIPAIFISGWLFVSSGLAYDVFGTPHPNEYYSQSESQIQIVTDRYAGKQQIDDFRN
LSPSLDTNN

Specific function: This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex [H]

COG id: NA

COG function: NA

Gene ontology:
GO:0009523: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0009767: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0015979: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0016021: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0019684: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0020037: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0030096: Cytochrome b559, alpha subunit of photosystem II PsbE
GO:0046872: Cytochrome b559, alpha subunit of photosystem II PsbE

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbE/psbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006217
- InterPro:   IPR006216
- InterPro:   IPR013081
- InterPro:   IPR013082 [H]

Pfam domain/function: PF00283 Cytochrom_B559; PF00284 Cytochrom_B559a [H]

EC number: NA

Molecular weight: Translated: 10160; Mature: 10029

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVTGERPFGEIITDFSFWKLHVINIPAIFISGWLFVSSGLAYDVFGTPHPNEYYSQSE
CCCCCCCCCHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCC
SQIQIVTDRYAGKQQIDDFRNLSPSLDTNN
CEEEEEECCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AGVTGERPFGEIITDFSFWKLHVINIPAIFISGWLFVSSGLAYDVFGTPHPNEYYSQSE
CCCCCCCCHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCC
SQIQIVTDRYAGKQQIDDFRNLSPSLDTNN
CEEEEEECCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA