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The map label for this gene is cph2 [H]

Identifier: 158334238

GI number: 158334238

Start: 1024180

End: 1025850

Strand: Reverse

Name: cph2 [H]

Synonym: AM1_1056

Alternate gene names: 158334238

Gene position: 1025850-1024180 (Counterclockwise)

Preceding gene: 158334239

Following gene: 158334237

Centisome position: 15.77

GC content: 48.95

Gene sequence:

>1671_bases
ATGAATACGGTTTCTGAGTCACCACTCGACCCTCCTTCTTCTGTTCCAACAAGACCCTCAATTAATCCTGCTGATCTTCA
CTTCCCTAGCGGTGCGATTTCGTTAGATTCATCCCTCTATATTGAGCGATTACCCCTGGAGAATCATGCCTATCAGGGCA
TTGAAAAACCGGGCGGTTTAGTGCGTATTCAAGCGCCCCAAGGCATGGGAAAAAGCTCTCTATTATTGCGGCTCACTGCT
CATGCTCGTGCCCAGGGCTATCAGACGGTGACAATCAACTTTCAAACCGCCGATCAAGATATTTTTACCAGTATTGGCAA
GTTCTTGCGGTGGTTCTGCGCTAGCGTTACTTATCATCTGAGAAAGCCCTCTTGTTTAGATGACTATTGGGATGACGACA
TTGGGGCAAAGCTAAGCTGCACCATGTATTTTGAAGATTATTTGCTGGCTGAGCTAGATACCCCCCTGGTCATTGCTCTT
CAGCATGTTGAAGAGATCTTTGAACATGTCGCCATTGCCGTCGATTTCTTACCCTTGTTGCGCTTTTGGCATGAGCAAGC
CAAACAAGGTGATGTTTTTCGCCATCTGCGACTCATGGTTAGTCACTCCACAGAAGTGTATGTTCCCCTGAATATTAATC
ACTCGCCGTTTAATGTGGGCTTGCCGATTCGGTTGCCGCCGTTTAATTTGGCCCAAGTCAAAGCATTGGCCTATGCCTAT
GGTTTGGACTGGGAATCCAACCGTGAGGCCCAGCAGTTAATGGACTTAGTGGGTGGGCGTCCTGCTTTAGTCAATATGGC
CCTGTATGACATTAGCTATGGCCAAAAGACCCTAGACCAGTTTTTGCAGGAGGCTCCCACCCAAGCAAGCATCTATCGCC
ACCACCTCCAGAAGCTCTTAACCACCCTCAATCACCAGCCTGAGCTAGCGGCGGCCCTCAAGGATGTGGTATCAGCAAAG
AGCGGGTTTGAATTAGAACCCGTCATTGCTTATAAGCTCAATAGCTTAGGGTTAGTGGAGCTAAGGGGAAATGAGTGCCT
GATCTCCTGTGAACTCTATAGGCAATTTTTTGTTCACAAAACCTTCAGTCAACTGGATGCTTGGCGAGAACGGTTAGCCC
AACTGGAAGAAGAGAATACGCAATTAAAACAGCTTGTTAATTTAGATGCCCTTACCCAAGTTGCCAATCGTCGGTCCTTT
GATGAGTTTATTCAGGCAAAGTGGCAACAGTTGGGCGAGATGCAGGCTCCTTTGGCCGTGATCTTAGCAGATGTAGACTG
CTTTAAGCTCTACAACGATACCTACGGTCATCAGGCTGGAGACCAATGCCTTCAGCAGGTTGCCCAGGCTATGCAAAAGT
GCGCTCAACGAGCCTCGGACTTGGTGGCACGATATGGCGGCGAAGAATTTGTGGTGGTGCTGCCCCTCACCACTGCAGAA
AGTGCGGCTCAAATGGCTGAGACTATGCTGAACTGCATCAAGGAGAAAAAGATAAGTCACGATCGTTCTACAGTCGCTAC
CAAAATTGTCACGGCCAGTATGGGGGTCGCCAGTGTCATTCCCACCCTCGATCAGGATCCGACGAGTTTAATCAAAGCCG
CGGATCAGGCACTTTACCAGGCCAAAGCATTAGGGCGAGATCGGGTGCAGATTGCTATTGCGGCTGACTAA

Upstream 100 bases:

>100_bases
TTGAGTTGGAATTGAGAATGCCAACCCGTTCTGGGCACAATAGGCTCAAACCAACTGACCTCCTGGTTTTGCTCAACTTT
AAGCTAAGCCTCTATTTAGA

Downstream 100 bases:

>100_bases
CCTGGCCTGAAGCTTATGCAATATCAGATTGGTGGTAGTCTTTCAGCCAGTGCGTCGACCTATATTGCCCGGCAAGCCGA
TCAGCAGATCTACGCTGCCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MNTVSESPLDPPSSVPTRPSINPADLHFPSGAISLDSSLYIERLPLENHAYQGIEKPGGLVRIQAPQGMGKSSLLLRLTA
HARAQGYQTVTINFQTADQDIFTSIGKFLRWFCASVTYHLRKPSCLDDYWDDDIGAKLSCTMYFEDYLLAELDTPLVIAL
QHVEEIFEHVAIAVDFLPLLRFWHEQAKQGDVFRHLRLMVSHSTEVYVPLNINHSPFNVGLPIRLPPFNLAQVKALAYAY
GLDWESNREAQQLMDLVGGRPALVNMALYDISYGQKTLDQFLQEAPTQASIYRHHLQKLLTTLNHQPELAAALKDVVSAK
SGFELEPVIAYKLNSLGLVELRGNECLISCELYRQFFVHKTFSQLDAWRERLAQLEEENTQLKQLVNLDALTQVANRRSF
DEFIQAKWQQLGEMQAPLAVILADVDCFKLYNDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAE
SAAQMAETMLNCIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTSLIKAADQALYQAKALGRDRVQIAIAAD

Sequences:

>Translated_556_residues
MNTVSESPLDPPSSVPTRPSINPADLHFPSGAISLDSSLYIERLPLENHAYQGIEKPGGLVRIQAPQGMGKSSLLLRLTA
HARAQGYQTVTINFQTADQDIFTSIGKFLRWFCASVTYHLRKPSCLDDYWDDDIGAKLSCTMYFEDYLLAELDTPLVIAL
QHVEEIFEHVAIAVDFLPLLRFWHEQAKQGDVFRHLRLMVSHSTEVYVPLNINHSPFNVGLPIRLPPFNLAQVKALAYAY
GLDWESNREAQQLMDLVGGRPALVNMALYDISYGQKTLDQFLQEAPTQASIYRHHLQKLLTTLNHQPELAAALKDVVSAK
SGFELEPVIAYKLNSLGLVELRGNECLISCELYRQFFVHKTFSQLDAWRERLAQLEEENTQLKQLVNLDALTQVANRRSF
DEFIQAKWQQLGEMQAPLAVILADVDCFKLYNDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAE
SAAQMAETMLNCIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTSLIKAADQALYQAKALGRDRVQIAIAAD
>Mature_556_residues
MNTVSESPLDPPSSVPTRPSINPADLHFPSGAISLDSSLYIERLPLENHAYQGIEKPGGLVRIQAPQGMGKSSLLLRLTA
HARAQGYQTVTINFQTADQDIFTSIGKFLRWFCASVTYHLRKPSCLDDYWDDDIGAKLSCTMYFEDYLLAELDTPLVIAL
QHVEEIFEHVAIAVDFLPLLRFWHEQAKQGDVFRHLRLMVSHSTEVYVPLNINHSPFNVGLPIRLPPFNLAQVKALAYAY
GLDWESNREAQQLMDLVGGRPALVNMALYDISYGQKTLDQFLQEAPTQASIYRHHLQKLLTTLNHQPELAAALKDVVSAK
SGFELEPVIAYKLNSLGLVELRGNECLISCELYRQFFVHKTFSQLDAWRERLAQLEEENTQLKQLVNLDALTQVANRRSF
DEFIQAKWQQLGEMQAPLAVILADVDCFKLYNDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAE
SAAQMAETMLNCIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTSLIKAADQALYQAKALGRDRVQIAIAAD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=33.7349397590361, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=39.7515527950311, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=37.5, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=30.1675977653631, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=34.9112426035503, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=196, Percent_Identity=30.1020408163265, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=32.5842696629214, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=35.2272727272727, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787541, Length=204, Percent_Identity=30.8823529411765, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=32.0512820512821, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=170, Percent_Identity=31.1764705882353, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 62163; Mature: 62163

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVSESPLDPPSSVPTRPSINPADLHFPSGAISLDSSLYIERLPLENHAYQGIEKPGGL
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCEEEECCCCCHHHCCCCCCCCE
VRIQAPQGMGKSSLLLRLTAHARAQGYQTVTINFQTADQDIFTSIGKFLRWFCASVTYHL
EEEECCCCCCCCHHEEEEEHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHC
RKPSCLDDYWDDDIGAKLSCTMYFEDYLLAELDTPLVIALQHVEEIFEHVAIAVDFLPLL
CCCCCCHHCCCCCCCCEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RFWHEQAKQGDVFRHLRLMVSHSTEVYVPLNINHSPFNVGLPIRLPPFNLAQVKALAYAY
HHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEECCCCCHHHHHHHHHHH
GLDWESNREAQQLMDLVGGRPALVNMALYDISYGQKTLDQFLQEAPTQASIYRHHLQKLL
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
TTLNHQPELAAALKDVVSAKSGFELEPVIAYKLNSLGLVELRGNECLISCELYRQFFVHK
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCEEEEHHHHHHHHHHH
TFSQLDAWRERLAQLEEENTQLKQLVNLDALTQVANRRSFDEFIQAKWQQLGEMQAPLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
ILADVDCFKLYNDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAE
HHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHH
SAAQMAETMLNCIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTSLIKAADQALYQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHH
AKALGRDRVQIAIAAD
HHHCCCCEEEEEEECC
>Mature Secondary Structure
MNTVSESPLDPPSSVPTRPSINPADLHFPSGAISLDSSLYIERLPLENHAYQGIEKPGGL
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCEEEECCCCCHHHCCCCCCCCE
VRIQAPQGMGKSSLLLRLTAHARAQGYQTVTINFQTADQDIFTSIGKFLRWFCASVTYHL
EEEECCCCCCCCHHEEEEEHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHC
RKPSCLDDYWDDDIGAKLSCTMYFEDYLLAELDTPLVIALQHVEEIFEHVAIAVDFLPLL
CCCCCCHHCCCCCCCCEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RFWHEQAKQGDVFRHLRLMVSHSTEVYVPLNINHSPFNVGLPIRLPPFNLAQVKALAYAY
HHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEECCCCCHHHHHHHHHHH
GLDWESNREAQQLMDLVGGRPALVNMALYDISYGQKTLDQFLQEAPTQASIYRHHLQKLL
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
TTLNHQPELAAALKDVVSAKSGFELEPVIAYKLNSLGLVELRGNECLISCELYRQFFVHK
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCEEEEHHHHHHHHHHH
TFSQLDAWRERLAQLEEENTQLKQLVNLDALTQVANRRSFDEFIQAKWQQLGEMQAPLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
ILADVDCFKLYNDTYGHQAGDQCLQQVAQAMQKCAQRASDLVARYGGEEFVVVLPLTTAE
HHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHH
SAAQMAETMLNCIKEKKISHDRSTVATKIVTASMGVASVIPTLDQDPTSLIKAADQALYQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHH
AKALGRDRVQIAIAAD
HHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]