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The map label for this gene is kaiA

Identifier: 158334178

GI number: 158334178

Start: 966730

End: 967629

Strand: Reverse

Name: kaiA

Synonym: AM1_0994

Alternate gene names: 158334178

Gene position: 967629-966730 (Counterclockwise)

Preceding gene: 158334182

Following gene: 158334177

Centisome position: 14.88

GC content: 41.56

Gene sequence:

>900_bases
ATGACCCTTTCTCAAACTGCGGTCTCTCGTCCCCAGATCTTTATCTGTACACTACTGAGTTCAGAATCTTTAGTTGACCT
TTATACCCAGATTTTGGAGGGCGATCGTTATAGTTTGGTTCATGCAACCTATGACAATTTCTTAGAGATAGTCGAACAAG
GCAAACATCGTATTGATTGTCTCATCTTCGAAAAGAATGCCGCACTCCCTAAAGTTGTCAGTCATTTGCACCGGGAAGCG
ATTTTACTGCCTGCTGTGCTGCTACAGGTTGAGGAATCGGTAGAAAAGACATCCCAACCCAATTCTGCGGATCGTGACCC
ACAACAGGACAGCTACTACCACATTGCTGAAGTGATTGTGGATCATGATCAAGAGGATATTTTGTCCAGTATCGATTGTG
CGATCGCACAGTTTCTACAGCTATCTAAAGCTTGTCGACTCCCCACTAGATTGCAAAAAAAATATGCTGACGAAGCCATC
CAAGATAATCTTGCTACCCAGCAGCAACGGCTGTCTCAAAAACTCAAGGAGCGTCTTGGTTACTTAGGGGTTTACTACAA
ACGCAATCCTCAACAGTTCTTTCACAAACTCACCGAAGAAGAACAAACCGATTACTTGGTGACCCTCAAGCGAGATTATC
GAGATATCATTCTCAACTACTTTCGGCAAGATAGTAGTGTGAACCAAGAAATTGATGACTTTGTGACTCAAATATTTTTT
GCGGATATCTCAATCTTAAAAATATTAGAAATTCATATGGAGTTAATGGATGCCTTTGCTAAAAAACTAAAATTAGAAGG
CCGCAATGAAGATATTCTGTTGGACTATCGCTTGACCTTAATCGATATCATGGCCCATTTGTGTGAGATGTATCGTCGAT
CCATTCCCAAAACCCGTTAA

Upstream 100 bases:

>100_bases
CCCAGGCAATGAAATCCGCTTCTTTATACATAACTTAATATTCCTTCATAATCTCATTTGATGCTAAAGTATTTCTTAAT
AATTAGATAAAATTGGCGTT

Downstream 100 bases:

>100_bases
TTATTCAAGACCGATCAACCCTAATTCCCTGCCATGAGCTCTATCAGAAAAACCTATGTTCTTAAACTCTATGTTGCTGG
CAACACCCCTAACTCTGTCA

Product: circadian clock protein KaiA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTLSQTAVSRPQIFICTLLSSESLVDLYTQILEGDRYSLVHATYDNFLEIVEQGKHRIDCLIFEKNAALPKVVSHLHREA
ILLPAVLLQVEESVEKTSQPNSADRDPQQDSYYHIAEVIVDHDQEDILSSIDCAIAQFLQLSKACRLPTRLQKKYADEAI
QDNLATQQQRLSQKLKERLGYLGVYYKRNPQQFFHKLTEEEQTDYLVTLKRDYRDIILNYFRQDSSVNQEIDDFVTQIFF
ADISILKILEIHMELMDAFAKKLKLEGRNEDILLDYRLTLIDIMAHLCEMYRRSIPKTR

Sequences:

>Translated_299_residues
MTLSQTAVSRPQIFICTLLSSESLVDLYTQILEGDRYSLVHATYDNFLEIVEQGKHRIDCLIFEKNAALPKVVSHLHREA
ILLPAVLLQVEESVEKTSQPNSADRDPQQDSYYHIAEVIVDHDQEDILSSIDCAIAQFLQLSKACRLPTRLQKKYADEAI
QDNLATQQQRLSQKLKERLGYLGVYYKRNPQQFFHKLTEEEQTDYLVTLKRDYRDIILNYFRQDSSVNQEIDDFVTQIFF
ADISILKILEIHMELMDAFAKKLKLEGRNEDILLDYRLTLIDIMAHLCEMYRRSIPKTR
>Mature_298_residues
TLSQTAVSRPQIFICTLLSSESLVDLYTQILEGDRYSLVHATYDNFLEIVEQGKHRIDCLIFEKNAALPKVVSHLHREAI
LLPAVLLQVEESVEKTSQPNSADRDPQQDSYYHIAEVIVDHDQEDILSSIDCAIAQFLQLSKACRLPTRLQKKYADEAIQ
DNLATQQQRLSQKLKERLGYLGVYYKRNPQQFFHKLTEEEQTDYLVTLKRDYRDIILNYFRQDSSVNQEIDDFVTQIFFA
DISILKILEIHMELMDAFAKKLKLEGRNEDILLDYRLTLIDIMAHLCEMYRRSIPKTR

Specific function: Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 kaiA N-terminal domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KAIA_ACAM1 (Q6L8L3)

Other databases:

- EMBL:   CP000828
- EMBL:   AB120712
- RefSeq:   YP_001515350.1
- ProteinModelPortal:   Q6L8L3
- GeneID:   5679820
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_0994
- HOGENOM:   HBG708967
- OMA:   GYLGVYY
- ProtClustDB:   CLSK893788
- BioCyc:   AMAR329726:AM1_0994-MONOMER
- InterPro:   IPR011006
- InterPro:   IPR011648
- InterPro:   IPR020844
- InterPro:   IPR020856
- InterPro:   IPR017944
- Gene3D:   G3DSA:1.10.1240.30

Pfam domain/function: PF07688 KaiA; SSF52172 CheY_like; SSF101215 KaiA/RbsU_helical_dom

EC number: NA

Molecular weight: Translated: 34921; Mature: 34790

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS51431 KAIA_C; PS51430 KAIA_N

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSQTAVSRPQIFICTLLSSESLVDLYTQILEGDRYSLVHATYDNFLEIVEQGKHRIDC
CCCCCHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCEEE
LIFEKNAALPKVVSHLHREAILLPAVLLQVEESVEKTSQPNSADRDPQQDSYYHIAEVIV
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
DHDQEDILSSIDCAIAQFLQLSKACRLPTRLQKKYADEAIQDNLATQQQRLSQKLKERLG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YLGVYYKRNPQQFFHKLTEEEQTDYLVTLKRDYRDIILNYFRQDSSVNQEIDDFVTQIFF
HHHHEEECCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ADISILKILEIHMELMDAFAKKLKLEGRNEDILLDYRLTLIDIMAHLCEMYRRSIPKTR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TLSQTAVSRPQIFICTLLSSESLVDLYTQILEGDRYSLVHATYDNFLEIVEQGKHRIDC
CCCCHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCEEE
LIFEKNAALPKVVSHLHREAILLPAVLLQVEESVEKTSQPNSADRDPQQDSYYHIAEVIV
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
DHDQEDILSSIDCAIAQFLQLSKACRLPTRLQKKYADEAIQDNLATQQQRLSQKLKERLG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YLGVYYKRNPQQFFHKLTEEEQTDYLVTLKRDYRDIILNYFRQDSSVNQEIDDFVTQIFF
HHHHEEECCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ADISILKILEIHMELMDAFAKKLKLEGRNEDILLDYRLTLIDIMAHLCEMYRRSIPKTR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA