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The map label for this gene is smpB

Identifier: 158334110

GI number: 158334110

Start: 895204

End: 895668

Strand: Reverse

Name: smpB

Synonym: AM1_0926

Alternate gene names: 158334110

Gene position: 895668-895204 (Counterclockwise)

Preceding gene: 158334111

Following gene: 158334107

Centisome position: 13.77

GC content: 49.68

Gene sequence:

>465_bases
ATGAGTGAGTCTTACAAAGTTATTAGTGATAATCGCCAAGCCCGATTTCAATACGAAATCCTAGAGGTGTTTGAGGCAGG
TCTTGCCCTAACTGGCACGGAAGTTAAATCGATCCGAGCGGGGAAAGTGAACCTGCGGGATGGCTTTGCCCAAATCCGCA
ATGAGGAAGCGTTCCTACTGAATGTGCATGTCTCCCCCCATACCAACGCTGGCCAGTTTTTTAATCACGACCCTCGGCGG
ACCCGCAAACTCTTGATGCATCGCCAAGAGATTCGCAAGCTCATTGGTAAAACTGAACAAAAAGGACTGACCTTGGTGCC
ATTGAAGCTTTATCTGCAGCGGGGCTGGATTAAGGTAACGATTGGTCTAGCGCGGGGTAAGAAACTCCACGATAAGCGGG
AGTCGATTAAGAAACGTCAGGATAAACGAGATATGGAGCGGGCATTAAAGCGGGGGGCTGAGTAG

Upstream 100 bases:

>100_bases
TCCCTCAAATCTATCGGTCGGTCCAGACCCGTCTTTGGCGATACTGGGGTACGGATGACTGAATCAACGAATTAGGATTT
GGCAGAGTACATTAGAAGGT

Downstream 100 bases:

>100_bases
AGTTGAGCACAGAGGCGCTTACGCCCTAGCTTGCCAAGCGCCATGAAACCCAAAGGGGATAATCTCGGGCAGTCCTAAAA
CGGCAATAGGACCTGCATCT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLLNVHVSPHTNAGQFFNHDPRR
TRKLLMHRQEIRKLIGKTEQKGLTLVPLKLYLQRGWIKVTIGLARGKKLHDKRESIKKRQDKRDMERALKRGAE

Sequences:

>Translated_154_residues
MSESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLLNVHVSPHTNAGQFFNHDPRR
TRKLLMHRQEIRKLIGKTEQKGLTLVPLKLYLQRGWIKVTIGLARGKKLHDKRESIKKRQDKRDMERALKRGAE
>Mature_153_residues
SESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLLNVHVSPHTNAGQFFNHDPRRT
RKLLMHRQEIRKLIGKTEQKGLTLVPLKLYLQRGWIKVTIGLARGKKLHDKRESIKKRQDKRDMERALKRGAE

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=47.2222222222222, Blast_Score=137, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_ACAM1 (B0BZP2)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001515282.1
- ProteinModelPortal:   B0BZP2
- SMR:   B0BZP2
- GeneID:   5679752
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_0926
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   AMAR329726:AM1_0926-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17907; Mature: 17776

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLL
CCCCCCEECCCCCHHHHHHHHHHHHHCCEECCCHHHHHCCCCCCHHHHHHHHCCCCEEEE
NVHVSPHTNAGQFFNHDPRRTRKLLMHRQEIRKLIGKTEQKGLTLVPLKLYLQRGWIKVT
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEHHHHHHHCCEEEEE
IGLARGKKLHDKRESIKKRQDKRDMERALKRGAE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLL
CCCCCEECCCCCHHHHHHHHHHHHHCCEECCCHHHHHCCCCCCHHHHHHHHCCCCEEEE
NVHVSPHTNAGQFFNHDPRRTRKLLMHRQEIRKLIGKTEQKGLTLVPLKLYLQRGWIKVT
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEHHHHHHHCCEEEEE
IGLARGKKLHDKRESIKKRQDKRDMERALKRGAE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA