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The map label for this gene is patA [H]

Identifier: 158334092

GI number: 158334092

Start: 875401

End: 876630

Strand: Direct

Name: patA [H]

Synonym: AM1_0908

Alternate gene names: 158334092

Gene position: 875401-876630 (Clockwise)

Preceding gene: 158334091

Following gene: 158334093

Centisome position: 13.46

GC content: 47.15

Gene sequence:

>1230_bases
ATGGCAGCAACTATGAGTGGCAAAATCTCAAATAAGCTGAACGTAGCGGACTTGCTCAGCCAGCACGCTAATGCCAAAAA
AGATGGTTGCTTAGTCGTTTCTAACGGCGCTATCAATTGGTTTTTTTATTTGGAAGAAAGCCAGTTAGTTTATGCAACTT
ACTCAGCTGACCCCTTGGACTTATTGGATAACCATTTGCGACGACTCAGTCGCCAGGTTCCTTCCCTCAATAGCGAGGTG
CGGACTCAAGTCAGAATTAACTTCAACGACGACTCTTCCGATCAAATCTGCCCGGATTATCAAGCCATTTCTTGGTTAGT
GAGAACCAACCAGCTAAAGCCTGCCGAAGCGGCAACCTTGGTAGAAGGCATTGTCATCGAAATTCTAGAATCCTACCTGT
TGGTGTCCGAAGGGACCTTTAAGTTCTTACCCAAATCGGCTCACCTGCCTGTATATGCCAAGCAAACCATCCCCCCCTTA
GTGCAAAAATGCCAGAAACGTTTGAATGCCTGGCAGGCTTTAGGTCCCATGGTTTGGTCGCCCCATCAGCGGCTCTACTT
TGCAGAGCAAAGTCCGGGCGCTGCCAAATTATCCCCCAGCAAGGTCCAGCAGTTACAGAAGATTCTGCGAGGATTTAGCT
TTCGCCATCTTGGAGTGCTGCTCAACCTCGATGAACTCCAACTGGCTCAAAACCTCAATTCTTTGATTGTAGACAAAGTG
ATCTTGCTGCAAGATCCACAGCCTCCCTTTAATCAGTTACCTCGATTGGCCGTCGGAGCTGTTAACAGCACTTCCCAGGC
AAGCGGAGCCCAGTCCGATAGTGATGCTGCATTAGGAAGTATTGGTTCCAGCGAAATTGGCCAGAAGAGTTACACCATTG
CCTGTGTGGATGATAGCCCCGCCATTCTCAACACCATCAATCGATATCTGCAAGATCAAAACGTTTCGGTCGTCATGATC
AGCGATCCAGTTAAAGCCTTAATCCAAATTATGCGAGCTAAGCCGGATTTGATTTTGTTAGATGTCGGTATGCCGTGGGT
GGATGGTTATGAGCTTTGTCGCCTGATCCGCAAGAATTCTCAATTCAAGAAAATTCCGGTAGTGATGGTCACAGGAAACA
CTGGGTTAATCGACCGAGCCAAAGCCAAAGTTGCTGGAGCTACGGACTATTTAACTAAACCATTTACCCAAGCTGATTTA
CAAAAAATGGTCTTTCGCCACTTGACCTGA

Upstream 100 bases:

>100_bases
CTCTCCACTGAATAACTCCCACTTAATGACCTAATTTCCTCTGTATCAGTGATGCAGAGTTCACCAAACCGTTGTGTGTT
GAGAAGGAAAAACAATACCC

Downstream 100 bases:

>100_bases
TCGATACCTACAGATGTATTTTTCTGGGAAAGGGGCACTCTGAAGGTATCAGATAAGGCCATGTTTACGAGCTTACTTTG
ATTAGTTTTAGGAGCAATAA

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: PAT-1 [H]

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MAATMSGKISNKLNVADLLSQHANAKKDGCLVVSNGAINWFFYLEESQLVYATYSADPLDLLDNHLRRLSRQVPSLNSEV
RTQVRINFNDDSSDQICPDYQAISWLVRTNQLKPAEAATLVEGIVIEILESYLLVSEGTFKFLPKSAHLPVYAKQTIPPL
VQKCQKRLNAWQALGPMVWSPHQRLYFAEQSPGAAKLSPSKVQQLQKILRGFSFRHLGVLLNLDELQLAQNLNSLIVDKV
ILLQDPQPPFNQLPRLAVGAVNSTSQASGAQSDSDAALGSIGSSEIGQKSYTIACVDDSPAILNTINRYLQDQNVSVVMI
SDPVKALIQIMRAKPDLILLDVGMPWVDGYELCRLIRKNSQFKKIPVVMVTGNTGLIDRAKAKVAGATDYLTKPFTQADL
QKMVFRHLT

Sequences:

>Translated_409_residues
MAATMSGKISNKLNVADLLSQHANAKKDGCLVVSNGAINWFFYLEESQLVYATYSADPLDLLDNHLRRLSRQVPSLNSEV
RTQVRINFNDDSSDQICPDYQAISWLVRTNQLKPAEAATLVEGIVIEILESYLLVSEGTFKFLPKSAHLPVYAKQTIPPL
VQKCQKRLNAWQALGPMVWSPHQRLYFAEQSPGAAKLSPSKVQQLQKILRGFSFRHLGVLLNLDELQLAQNLNSLIVDKV
ILLQDPQPPFNQLPRLAVGAVNSTSQASGAQSDSDAALGSIGSSEIGQKSYTIACVDDSPAILNTINRYLQDQNVSVVMI
SDPVKALIQIMRAKPDLILLDVGMPWVDGYELCRLIRKNSQFKKIPVVMVTGNTGLIDRAKAKVAGATDYLTKPFTQADL
QKMVFRHLT
>Mature_408_residues
AATMSGKISNKLNVADLLSQHANAKKDGCLVVSNGAINWFFYLEESQLVYATYSADPLDLLDNHLRRLSRQVPSLNSEVR
TQVRINFNDDSSDQICPDYQAISWLVRTNQLKPAEAATLVEGIVIEILESYLLVSEGTFKFLPKSAHLPVYAKQTIPPLV
QKCQKRLNAWQALGPMVWSPHQRLYFAEQSPGAAKLSPSKVQQLQKILRGFSFRHLGVLLNLDELQLAQNLNSLIVDKVI
LLQDPQPPFNQLPRLAVGAVNSTSQASGAQSDSDAALGSIGSSEIGQKSYTIACVDDSPAILNTINRYLQDQNVSVVMIS
DPVKALIQIMRAKPDLILLDVGMPWVDGYELCRLIRKNSQFKKIPVVMVTGNTGLIDRAKAKVAGATDYLTKPFTQADLQ
KMVFRHLT

Specific function: Controls heterocyst pattern formation. Required for the differentiation of intercalary heterocysts but not for terminal heterocysts [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=111, Percent_Identity=36.9369369369369, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789149, Length=119, Percent_Identity=33.6134453781513, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789809, Length=113, Percent_Identity=32.7433628318584, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786911, Length=109, Percent_Identity=33.9449541284404, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790860, Length=105, Percent_Identity=31.4285714285714, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 45241; Mature: 45110

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATMSGKISNKLNVADLLSQHANAKKDGCLVVSNGAINWFFYLEESQLVYATYSADPLD
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEEEECCCHHH
LLDNHLRRLSRQVPSLNSEVRTQVRINFNDDSSDQICPDYQAISWLVRTNQLKPAEAATL
HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
VEGIVIEILESYLLVSEGTFKFLPKSAHLPVYAKQTIPPLVQKCQKRLNAWQALGPMVWS
HHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEHHCCHHHHHHHHHHHHHHHHHCCCCCC
PHQRLYFAEQSPGAAKLSPSKVQQLQKILRGFSFRHLGVLLNLDELQLAQNLNSLIVDKV
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEHHHEEECHHHHHHHHHHHHHHHHHE
ILLQDPQPPFNQLPRLAVGAVNSTSQASGAQSDSDAALGSIGSSEIGQKSYTIACVDDSP
EEECCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCEEEEEECCCC
AILNTINRYLQDQNVSVVMISDPVKALIQIMRAKPDLILLDVGMPWVDGYELCRLIRKNS
HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
QFKKIPVVMVTGNTGLIDRAKAKVAGATDYLTKPFTQADLQKMVFRHLT
CCCEEEEEEEECCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AATMSGKISNKLNVADLLSQHANAKKDGCLVVSNGAINWFFYLEESQLVYATYSADPLD
CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEEEECCCHHH
LLDNHLRRLSRQVPSLNSEVRTQVRINFNDDSSDQICPDYQAISWLVRTNQLKPAEAATL
HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
VEGIVIEILESYLLVSEGTFKFLPKSAHLPVYAKQTIPPLVQKCQKRLNAWQALGPMVWS
HHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEHHCCHHHHHHHHHHHHHHHHHCCCCCC
PHQRLYFAEQSPGAAKLSPSKVQQLQKILRGFSFRHLGVLLNLDELQLAQNLNSLIVDKV
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEHHHEEECHHHHHHHHHHHHHHHHHE
ILLQDPQPPFNQLPRLAVGAVNSTSQASGAQSDSDAALGSIGSSEIGQKSYTIACVDDSP
EEECCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCEEEEEECCCC
AILNTINRYLQDQNVSVVMISDPVKALIQIMRAKPDLILLDVGMPWVDGYELCRLIRKNS
HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
QFKKIPVVMVTGNTGLIDRAKAKVAGATDYLTKPFTQADLQKMVFRHLT
CCCEEEEEEEECCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1608976; 11237320; 11759840 [H]