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The map label for this gene is yjcF [C]

Identifier: 158334066

GI number: 158334066

Start: 855646

End: 856182

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_0882

Alternate gene names: 158334066

Gene position: 856182-855646 (Counterclockwise)

Preceding gene: 158334068

Following gene: 158334065

Centisome position: 13.16

GC content: 48.79

Gene sequence:

>537_bases
GTGAATCTATCTGGAGAGGAGATTCACTCTCTCGATGGCAAGTATGCAGAGGGAAAGCTTATGAATTCAACTCAATTGTT
ACGAGATTATGGTTCTGGACAACGTAGTTTCCAGAATGCCTATTGTCATCAGATTGATCTGCGGGGTGCAGCCTTAAGTC
AGATTAATTTGAGTGGGGCTGATCTGAGTCAAGCGGACTTAGCCAGTACAAACTTGAATGGTGCTAATCTGAGTTACGCC
AATTTGACAGATGCTGATTTAAGCCAGGCCGATCTGCGGAGTGCAAACTTGAGCCAGGTTAATTTGATTGGTGCTGATCT
CAGTGGGGCAAAGTTGGGGCGGGCTAATCTCAAAGGTGCTGACTTGCGGTGTGCCAATCTGAGTCATGCCGATTTCATTG
GGGCTTGTTTGGATGGCGCTGAATTGAGTGGGGCTGAGTTAAACGGTGCCAACATTACCCAAGCAGAATTAAGCCAAACG
GCGCGGCATAGTGGTGAATCCCGTCGGTGGGTTACTTGGGCCGGTGGTCGCTCCTAG

Upstream 100 bases:

>100_bases
GTGACCCTTACGGCATTGTATTTTCAGGTTTGCTTATTTTGTTATTTCTGTTTTTTTCCATCGCATCACTGTTTTAGAGG
GGTGATGCAGGACGGAGAGA

Downstream 100 bases:

>100_bases
GTTAATGACCGCTCTCTCCTCTCGCCTGGGCTACAGAATGACCTCGTAACTCGGTTTTGAATTACCGTTATATTGAGGAA
ATGGTGTAGCCCCGCTAGGC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNLSGEEIHSLDGKYAEGKLMNSTQLLRDYGSGQRSFQNAYCHQIDLRGAALSQINLSGADLSQADLASTNLNGANLSYA
NLTDADLSQADLRSANLSQVNLIGADLSGAKLGRANLKGADLRCANLSHADFIGACLDGAELSGAELNGANITQAELSQT
ARHSGESRRWVTWAGGRS

Sequences:

>Translated_178_residues
MNLSGEEIHSLDGKYAEGKLMNSTQLLRDYGSGQRSFQNAYCHQIDLRGAALSQINLSGADLSQADLASTNLNGANLSYA
NLTDADLSQADLRSANLSQVNLIGADLSGAKLGRANLKGADLRCANLSHADFIGACLDGAELSGAELNGANITQAELSQT
ARHSGESRRWVTWAGGRS
>Mature_178_residues
MNLSGEEIHSLDGKYAEGKLMNSTQLLRDYGSGQRSFQNAYCHQIDLRGAALSQINLSGADLSQADLASTNLNGANLSYA
NLTDADLSQADLRSANLSQVNLIGADLSGAKLGRANLKGADLRCANLSHADFIGACLDGAELSGAELNGANITQAELSQT
ARHSGESRRWVTWAGGRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=99, Percent_Identity=41.4141414141414, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 18725; Mature: 18725

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSGEEIHSLDGKYAEGKLMNSTQLLRDYGSGQRSFQNAYCHQIDLRGAALSQINLSGA
CCCCHHHHHHCCCCCCCCEECCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEEEEECCCC
DLSQADLASTNLNGANLSYANLTDADLSQADLRSANLSQVNLIGADLSGAKLGRANLKGA
CCCCHHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCC
DLRCANLSHADFIGACLDGAELSGAELNGANITQAELSQTARHSGESRRWVTWAGGRS
CEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure
MNLSGEEIHSLDGKYAEGKLMNSTQLLRDYGSGQRSFQNAYCHQIDLRGAALSQINLSGA
CCCCHHHHHHCCCCCCCCEECCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEEEEECCCC
DLSQADLASTNLNGANLSYANLTDADLSQADLRSANLSQVNLIGADLSGAKLGRANLKGA
CCCCHHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCC
DLRCANLSHADFIGACLDGAELSGAELNGANITQAELSQTARHSGESRRWVTWAGGRS
CEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]