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The map label for this gene is ybbI [C]

Identifier: 158333788

GI number: 158333788

Start: 583320

End: 583736

Strand: Reverse

Name: ybbI [C]

Synonym: AM1_0596

Alternate gene names: 158333788

Gene position: 583736-583320 (Counterclockwise)

Preceding gene: 158333789

Following gene: 158333787

Centisome position: 8.98

GC content: 45.56

Gene sequence:

>417_bases
ATGAACCGTGTTAGCGATGTTGCTCGCACCTTTGGTCTCAACCCCCAGACCCTCTACTACTATGAGCGGATTGGCCTCAT
TCCTGCCCCTGAAAGAAATGACTCAGGCTATCGAGTCTTCAATGATCAAGATTTGGCCCGTTTATCCCTCATCGAGCGGG
CTAAAACCCTTGGGCTGACCCTAGATGAAATTAAAGAGATCTTGCAATTACAAGCCGGGAATACCTTGACTTGCTGTGAC
ATTCACGAACGGTTACGCAAAAAACTTGAACAGATCGAAATCAAAATTACTCAGCTACAAGAACTGAAAGCAGAATTACT
GCCTCTGATTCATCGATGTGAAGAGCAACTCAGCCAGCAGAAAATTCATACGGATTGCGGCGTCTTGGCAGAAGAAATAT
CCGTAGGCAAAAGTTAG

Upstream 100 bases:

>100_bases
ACAACTAAATTGGCTCATATTCAAACAAGCATATTCCCCCTTGACCTTATACCCAGATACAAGGTTTATGATGCAGTCAG
TGTAAATCCCTATCGCCATC

Downstream 100 bases:

>100_bases
ATCGTTTTTGATTCTTAAAAATTTTCCAAGTTGAGCTATTTCTAGAACACTTCACCCGTCATGACCACTCAAAAAACTCG
ATTTCCCCCACCAGTCCAGG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNRVSDVARTFGLNPQTLYYYERIGLIPAPERNDSGYRVFNDQDLARLSLIERAKTLGLTLDEIKEILQLQAGNTLTCCD
IHERLRKKLEQIEIKITQLQELKAELLPLIHRCEEQLSQQKIHTDCGVLAEEISVGKS

Sequences:

>Translated_138_residues
MNRVSDVARTFGLNPQTLYYYERIGLIPAPERNDSGYRVFNDQDLARLSLIERAKTLGLTLDEIKEILQLQAGNTLTCCD
IHERLRKKLEQIEIKITQLQELKAELLPLIHRCEEQLSQQKIHTDCGVLAEEISVGKS
>Mature_138_residues
MNRVSDVARTFGLNPQTLYYYERIGLIPAPERNDSGYRVFNDQDLARLSLIERAKTLGLTLDEIKEILQLQAGNTLTCCD
IHERLRKKLEQIEIKITQLQELKAELLPLIHRCEEQLSQQKIHTDCGVLAEEISVGKS

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=110, Percent_Identity=33.6363636363636, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1789687, Length=114, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15819; Mature: 15819

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVSDVARTFGLNPQTLYYYERIGLIPAPERNDSGYRVFNDQDLARLSLIERAKTLGLT
CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
LDEIKEILQLQAGNTLTCCDIHERLRKKLEQIEIKITQLQELKAELLPLIHRCEEQLSQQ
HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIHTDCGVLAEEISVGKS
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRVSDVARTFGLNPQTLYYYERIGLIPAPERNDSGYRVFNDQDLARLSLIERAKTLGLT
CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
LDEIKEILQLQAGNTLTCCDIHERLRKKLEQIEIKITQLQELKAELLPLIHRCEEQLSQQ
HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIHTDCGVLAEEISVGKS
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]