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The map label for this gene is rbpA [H]

Identifier: 158333760

GI number: 158333760

Start: 556808

End: 557095

Strand: Direct

Name: rbpA [H]

Synonym: AM1_0568

Alternate gene names: 158333760

Gene position: 556808-557095 (Clockwise)

Preceding gene: 158333758

Following gene: 158333762

Centisome position: 8.56

GC content: 45.49

Gene sequence:

>288_bases
ATGTCGATTTATGTTGGTAACCTCTCTTATGATGTTACAGAGCAAGACCTAAACACTGTTTTCGCAGAATATGGAACTGT
AAAGTCCGCCAAACTTCCTACTGACCGTGAAACAGGACGGGTGAGAGGATTTGGTTTTGTCGAGATGAGTGATGATGCCG
AAGAAACCAAGGCAATTGAAGAACTAGATGGTGCTGAATGGATGGGACGCACCCTGAAAGTCAATAAAGCAAAACCTCGT
GAAAATAGAGGCGGGGGTGGAAACTTTGGTGGCGGACGACGCTACTAA

Upstream 100 bases:

>100_bases
CCGTTAGTTTTCAGAATTGCTTGGTTTTATCCAGCTCAATTTTTAAGACCACGCACCGAAATCTAATTCTCTACACCCTA
CTGATTTTGGGATTTAATTC

Downstream 100 bases:

>100_bases
AGCCCATTTGGTTTGAGAAGATTTGATCTCATAGCTCTAATATTTTGGGCTATGAGATTTTTTCTTGCAATTTCTCTTAT
CCTTTAGCAAAGGGCTTGAT

Product: RNA-binding region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIEELDGAEWMGRTLKVNKAKPR
ENRGGGGNFGGGRRY

Sequences:

>Translated_95_residues
MSIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIEELDGAEWMGRTLKVNKAKPR
ENRGGGGNFGGGRRY
>Mature_94_residues
SIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIEELDGAEWMGRTLKVNKAKPRE
NRGGGGNFGGGRRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=41.4634146341463, Blast_Score=73, Evalue=4e-14,
Organism=Homo sapiens, GI4557493, Length=91, Percent_Identity=39.5604395604396, Blast_Score=73, Evalue=6e-14,
Organism=Homo sapiens, GI35493811, Length=89, Percent_Identity=38.2022471910112, Blast_Score=72, Evalue=9e-14,
Organism=Homo sapiens, GI4757926, Length=89, Percent_Identity=38.2022471910112, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4502847, Length=85, Percent_Identity=38.8235294117647, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI116734694, Length=92, Percent_Identity=34.7826086956522, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI116734698, Length=92, Percent_Identity=34.7826086956522, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI116734696, Length=92, Percent_Identity=34.7826086956522, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI5174637, Length=83, Percent_Identity=36.144578313253, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI45439316, Length=83, Percent_Identity=36.144578313253, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=37.6623376623377, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=42.6829268292683, Blast_Score=81, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=46.1538461538462, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=41.5584415584416, Blast_Score=78, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=44.7368421052632, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17539498, Length=78, Percent_Identity=39.7435897435897, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319689, Length=82, Percent_Identity=41.4634146341463, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=43.9024390243902, Blast_Score=76, Evalue=5e-15,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=41.025641025641, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=39.1891891891892, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=39.1891891891892, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10500; Mature: 10369

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIE
CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
ELDGAEWMGRTLKVNKAKPRENRGGGGNFGGGRRY
HCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIE
EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
ELDGAEWMGRTLKVNKAKPRENRGGGGNFGGGRRY
HCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]