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The map label for this gene is yjcF [C]

Identifier: 158333662

GI number: 158333662

Start: 441778

End: 442494

Strand: Direct

Name: yjcF [C]

Synonym: AM1_0464

Alternate gene names: 158333662

Gene position: 441778-442494 (Clockwise)

Preceding gene: 158333661

Following gene: 158333664

Centisome position: 6.79

GC content: 53.56

Gene sequence:

>717_bases
ATGCAGTCCCTTAACCAGCTGATGGAGTCCTATGCTGCCGGACAGCGAGACTTTGCCCACAGCCAACTTCTCGAAGCAGA
AATTGTGAAGGCTGATTTGGCAGGTATTGATCTGAGTCGGGCGGATCTGCGGCAAGCTCGGCTTGGACGTACCAATTTCA
GTCATGGAACGTTTAGGGAGGCAGATTTAAGTGAAGCCCTGCTATGGGGGGCGGATTTAAGCGGGGCCGATCTTAGCAGC
GCAGTATTGCGCGAAGCTGATTTGAGTGGGGCTAAATTAGTCCAGGTTAATCTGGCCAAGGCCAACCTCTACAAAGCCAG
CCTGTGTGGGACTAATCTAAGGCAGGCCAATCTCACGGAGACCATTTTGTATGAGGTGGATTTAAGACCTTCCTTGGATC
AGGGAACCGATTTGGGGGAGGCCGATCTGACCAATGCGGAGTTGAATTATGCCCATCTGAGTGGGGCAACGTTGGCCCAC
GCTATCTTAGTGGGGGCTAAACTTTGCCGCGCAAACTTGAGTCAGCAAGGATGGGGGGGACAGGTGCCGACGGATTTAAG
GGGAGCTGACCTCCAACAGGCTGATTTGAGCTATGCAGATTTGCGTGGTGCTTGGTTACAAGAGGCCAACCTCCGCCGAG
CGGATTTAACGGGGACCGATTTAGGGGGTGCCCAATTGACAGGGGCCATTATGCCGGATGGGCGGACTTATACCTAA

Upstream 100 bases:

>100_bases
CTGAACACGCAAGGGATTAACTGCGTCCAACCCTCACGGTTTAAACTGTGAGGGCTTTCTCTTGTTGACCCGTTCGTGAA
GCTCAGGAGAACCGTAATCG

Downstream 100 bases:

>100_bases
GCGCTGGAACGTTTGAGGTTTAGTGAATTTCGTCACGCAGGTGTTCCGCATTGAGGGGTGCAATCAGATAGAGACGTAGA
AAATCTCCAATGATGCCTAA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MQSLNQLMESYAAGQRDFAHSQLLEAEIVKADLAGIDLSRADLRQARLGRTNFSHGTFREADLSEALLWGADLSGADLSS
AVLREADLSGAKLVQVNLAKANLYKASLCGTNLRQANLTETILYEVDLRPSLDQGTDLGEADLTNAELNYAHLSGATLAH
AILVGAKLCRANLSQQGWGGQVPTDLRGADLQQADLSYADLRGAWLQEANLRRADLTGTDLGGAQLTGAIMPDGRTYT

Sequences:

>Translated_238_residues
MQSLNQLMESYAAGQRDFAHSQLLEAEIVKADLAGIDLSRADLRQARLGRTNFSHGTFREADLSEALLWGADLSGADLSS
AVLREADLSGAKLVQVNLAKANLYKASLCGTNLRQANLTETILYEVDLRPSLDQGTDLGEADLTNAELNYAHLSGATLAH
AILVGAKLCRANLSQQGWGGQVPTDLRGADLQQADLSYADLRGAWLQEANLRRADLTGTDLGGAQLTGAIMPDGRTYT
>Mature_238_residues
MQSLNQLMESYAAGQRDFAHSQLLEAEIVKADLAGIDLSRADLRQARLGRTNFSHGTFREADLSEALLWGADLSGADLSS
AVLREADLSGAKLVQVNLAKANLYKASLCGTNLRQANLTETILYEVDLRPSLDQGTDLGEADLTNAELNYAHLSGATLAH
AILVGAKLCRANLSQQGWGGQVPTDLRGADLQQADLSYADLRGAWLQEANLRRADLTGTDLGGAQLTGAIMPDGRTYT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=199, Percent_Identity=32.1608040201005, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221377802, Length=179, Percent_Identity=31.2849162011173, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 25455; Mature: 25455

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLNQLMESYAAGQRDFAHSQLLEAEIVKADLAGIDLSRADLRQARLGRTNFSHGTFRE
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
ADLSEALLWGADLSGADLSSAVLREADLSGAKLVQVNLAKANLYKASLCGTNLRQANLTE
CCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCCCE
TILYEVDLRPSLDQGTDLGEADLTNAELNYAHLSGATLAHAILVGAKLCRANLSQQGWGG
EEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
QVPTDLRGADLQQADLSYADLRGAWLQEANLRRADLTGTDLGGAQLTGAIMPDGRTYT
CCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MQSLNQLMESYAAGQRDFAHSQLLEAEIVKADLAGIDLSRADLRQARLGRTNFSHGTFRE
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
ADLSEALLWGADLSGADLSSAVLREADLSGAKLVQVNLAKANLYKASLCGTNLRQANLTE
CCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCCCE
TILYEVDLRPSLDQGTDLGEADLTNAELNYAHLSGATLAHAILVGAKLCRANLSQQGWGG
EEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
QVPTDLRGADLQQADLSYADLRGAWLQEANLRRADLTGTDLGGAQLTGAIMPDGRTYT
CCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA