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The map label for this gene is psbA

Identifier: 158333646

GI number: 158333646

Start: 428652

End: 429743

Strand: Reverse

Name: psbA

Synonym: AM1_0448

Alternate gene names: 158333646

Gene position: 429743-428652 (Counterclockwise)

Preceding gene: 158333647

Following gene: 158333645

Centisome position: 6.61

GC content: 47.99

Gene sequence:

>1092_bases
ATGTCTACTACGTTTCAAACTCCATCGAGATTACCCACTGTTTCCGCCTGGGACCAATTTTGTGAGTGGATTACCAGTAC
CCACAATCGGCTCTATGTTGGTTGGTTTGGCCTACTGATGATTCCATCCCTATTCGTTTCAGCCATAACCTTCATGCTCG
CCTGGGTGGCGGCCCCTTCTGTTGATATGGAAGGTATTCGTGAACCTATTATCAGTTCTCTTCTAGGTGGAAGTAATGTG
ATTACTGCTGCGGTGATACCTACTTCAGCCGCAATAGGTTTACACTTATACCCCTTATGGGAAGCTACATCGATGGATGA
GTGGCTCTACAACGGAGGGCCTTATCAACTGATCATCTTGCATTTTTTGATCGCTATTTGGACCTATCTGGGGCGACAGT
GGGAGTTGAGCTATCGTCTGGGTATGCGTCCCTGGATTGCTATGGCTTTTTCTGCCCCAGTTGCTGCTGCCACGGCAGTG
CTATTGGTGTACCCAATGGGACAAGGAAGCTTCTCCGAAGGGTTACCCCTAGGAATTTCCGGCACCTTCCACTTTATGAT
GGCGGTTCAAGCGGAACATAATATCTTGATGCATCCGTTTCATATGTTGGGGGTAGTCGGTGTCTTTGGTGGAGCCTTCC
TCAGTGCCATGCATGGCTCTTTAGTCACCTCCAGCTTGGTTCAGGAAACCTCTAGCCTGAAATCTGTTAATACGGGGTAT
AAATTTGGCCAACAGGAAGCCACCTATAATTTACTCGCGGGACATGCTGGATATCTAGGACGCTTGTTTATCCCTGATAT
TGCCTTTCGTAATAGCCGTTCCATTCATTTTCTATTGGCGGTACTGCCCACGATCGGTATCTGGTTTGCCGCTTTAGGCA
TCGGCACGATGGCATTCAATTTGAATGGGTTTAATTTCAATCACTCTCTGCTCGATAGCAGTGGACGACCCATCCGCACC
GAAGCCGATCTCTTGAATCGGGCCACGATGGGACTACAGGTGATGCATTCAGTTAATGCCCATCACTTCTCCTTAACGCT
AGCTTCAACCGAGTCTAAGGAAATTCCTACGATTCCGATAATGACGAGCTAA

Upstream 100 bases:

>100_bases
TCGGGTTATCCATCTGGCTTTACAGTTACGACTCCAGGACATTTAGGGCCCAAACCCAATACTTAATCTCAACTCCATCA
CGCTAACAGGAGCAATAACT

Downstream 100 bases:

>100_bases
GAGCACGTTGAAAAGGAGGTTGCTTCAGCCTCAATCCGCTGAACGATCTCCTTCTAGGCTCCAGAATACAGTCAATCTAT
TTAACAATGCCAGAGGCCAC

Product: photosystem II D1 protein PsbA

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 1; Photosystem II protein D1 1

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSTTFQTPSRLPTVSAWDQFCEWITSTHNRLYVGWFGLLMIPSLFVSAITFMLAWVAAPSVDMEGIREPIISSLLGGSNV
ITAAVIPTSAAIGLHLYPLWEATSMDEWLYNGGPYQLIILHFLIAIWTYLGRQWELSYRLGMRPWIAMAFSAPVAAATAV
LLVYPMGQGSFSEGLPLGISGTFHFMMAVQAEHNILMHPFHMLGVVGVFGGAFLSAMHGSLVTSSLVQETSSLKSVNTGY
KFGQQEATYNLLAGHAGYLGRLFIPDIAFRNSRSIHFLLAVLPTIGIWFAALGIGTMAFNLNGFNFNHSLLDSSGRPIRT
EADLLNRATMGLQVMHSVNAHHFSLTLASTESKEIPTIPIMTS

Sequences:

>Translated_363_residues
MSTTFQTPSRLPTVSAWDQFCEWITSTHNRLYVGWFGLLMIPSLFVSAITFMLAWVAAPSVDMEGIREPIISSLLGGSNV
ITAAVIPTSAAIGLHLYPLWEATSMDEWLYNGGPYQLIILHFLIAIWTYLGRQWELSYRLGMRPWIAMAFSAPVAAATAV
LLVYPMGQGSFSEGLPLGISGTFHFMMAVQAEHNILMHPFHMLGVVGVFGGAFLSAMHGSLVTSSLVQETSSLKSVNTGY
KFGQQEATYNLLAGHAGYLGRLFIPDIAFRNSRSIHFLLAVLPTIGIWFAALGIGTMAFNLNGFNFNHSLLDSSGRPIRT
EADLLNRATMGLQVMHSVNAHHFSLTLASTESKEIPTIPIMTS
>Mature_362_residues
STTFQTPSRLPTVSAWDQFCEWITSTHNRLYVGWFGLLMIPSLFVSAITFMLAWVAAPSVDMEGIREPIISSLLGGSNVI
TAAVIPTSAAIGLHLYPLWEATSMDEWLYNGGPYQLIILHFLIAIWTYLGRQWELSYRLGMRPWIAMAFSAPVAAATAVL
LVYPMGQGSFSEGLPLGISGTFHFMMAVQAEHNILMHPFHMLGVVGVFGGAFLSAMHGSLVTSSLVQETSSLKSVNTGYK
FGQQEATYNLLAGHAGYLGRLFIPDIAFRNSRSIHFLLAVLPTIGIWFAALGIGTMAFNLNGFNFNHSLLDSSGRPIRTE
ADLLNRATMGLQVMHSVNAHHFSLTLASTESKEIPTIPIMTS

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA1_ACAM1 (B0CB14)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001514818.1
- ProteinModelPortal:   B0CB14
- SMR:   B0CB14
- GeneID:   5679279
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_0448
- HOGENOM:   HBG284766
- OMA:   GQGSFSE
- ProtClustDB:   CLSK892431
- BioCyc:   AMAR329726:AM1_0448-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- PRINTS:   PR00256
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39722; Mature: 39590

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x215fa7e4)-; HASH(0x224c1354)-; HASH(0x226de84c)-; HASH(0x40c10eb0)-; HASH(0x226e7f08)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTFQTPSRLPTVSAWDQFCEWITSTHNRLYVGWFGLLMIPSLFVSAITFMLAWVAAPS
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
VDMEGIREPIISSLLGGSNVITAAVIPTSAAIGLHLYPLWEATSMDEWLYNGGPYQLIIL
CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHCCCCHHHHHH
HFLIAIWTYLGRQWELSYRLGMRPWIAMAFSAPVAAATAVLLVYPMGQGSFSEGLPLGIS
HHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCHHHHHEEEEEEEECCCCCCCCCCCCCCC
GTFHFMMAVQAEHNILMHPFHMLGVVGVFGGAFLSAMHGSLVTSSLVQETSSLKSVNTGY
CCEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KFGQQEATYNLLAGHAGYLGRLFIPDIAFRNSRSIHFLLAVLPTIGIWFAALGIGTMAFN
CCCCCHHHHHHHHCCCCCHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEE
LNGFNFNHSLLDSSGRPIRTEADLLNRATMGLQVMHSVNAHHFSLTLASTESKEIPTIPI
ECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
MTS
CCH
>Mature Secondary Structure 
STTFQTPSRLPTVSAWDQFCEWITSTHNRLYVGWFGLLMIPSLFVSAITFMLAWVAAPS
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
VDMEGIREPIISSLLGGSNVITAAVIPTSAAIGLHLYPLWEATSMDEWLYNGGPYQLIIL
CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHCCCCHHHHHH
HFLIAIWTYLGRQWELSYRLGMRPWIAMAFSAPVAAATAVLLVYPMGQGSFSEGLPLGIS
HHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCHHHHHEEEEEEEECCCCCCCCCCCCCCC
GTFHFMMAVQAEHNILMHPFHMLGVVGVFGGAFLSAMHGSLVTSSLVQETSSLKSVNTGY
CCEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KFGQQEATYNLLAGHAGYLGRLFIPDIAFRNSRSIHFLLAVLPTIGIWFAALGIGTMAFN
CCCCCHHHHHHHHCCCCCHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEE
LNGFNFNHSLLDSSGRPIRTEADLLNRATMGLQVMHSVNAHHFSLTLASTESKEIPTIPI
ECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
MTS
CCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA