Click here to switch to the map view.

The map label for this gene is ykfC [C]

Identifier: 158333546

GI number: 158333546

Start: 317020

End: 317865

Strand: Direct

Name: ykfC [C]

Synonym: AM1_0345

Alternate gene names: 158333546

Gene position: 317020-317865 (Clockwise)

Preceding gene: 158333545

Following gene: 158333547

Centisome position: 4.87

GC content: 48.11

Gene sequence:

>846_bases
TTGCGGTTGATATCGGCGGCCCCCTATCGGGACCGAGTCGTTCACCATGCCCTTTGCAATGTTATTATTCCGGTGTTTGA
ACCGACGCTTATTAGCGATTCCTATGCCAATCGGTGGGGATATGGCACCCATCGAGCCGTGCAGCGGTTTACGCAGTTTG
CTCGCTCCAGCCGATATGTATTGCAGTGCGATATTCGCAAATATTTCCCCTCCATTGATCATGGCCTGCTGAAGGCTGGC
CTACGCCGCAAAATCAAGTGTCCAAAAACCCTCTGGCTGATTGACCAAATCATCGATCACAGCAATCCCCAAGCAACAGT
CCTTGAATATTTCCCCGGTGATGATTTACTCACTCCCCTTGCCCATCGCCGAGGGCTACCTATTGGCAACCTAACCAGTC
AGTTTTTTGCCAATGTCTATCTGAATGGGTTCGATCACTTTGTCAAAGAGCAGTTGAAAACCAAAAAATACGTCAGATAT
GTGGATGACTTTGCCCTGTTCGATGACAGCCGTGAACAGTTAGTTCAAGCTCGCCAAGCTATCGAAGCCTATTTAAACCA
ACTCCGACTCAAAATTCATCCGATCAAAAGCCAAATCGTCGCCACCCACCATGGCGTCGCTTTTTTGGGATTTCGGATTT
TCCCCGCTCATATTCGCGTCCAGAATGCCAATATCCGCAGGAGCCGTAAAAGATTACGAAAACTACAAAAAGCCTATGCA
CAAGGTGAAATTAGTGCCACGATGATCGATCAATCGATTCAAAGTTGGGTTGCCCACCTTAGCCATGCTGATACTTGGCA
ACTGCGACAACGGATATTTGCTGACCTTGTGTTTGCAAGGCAGTAG

Upstream 100 bases:

>100_bases
AAACCCGAGACTGTTTGGGTTGAAGCTTAAGAATAACGAGGAGAGGCAATTCATCTAGCCTTTACGCGATTCATGCAACA
AAGCCATCTTTGAGCCTAAA

Downstream 100 bases:

>100_bases
AGATGGGCTAGACACAACCGTGCTGCGGGGCGGTTCCTGGAACAACAATCCGAGGAACTGCCGCTCGGCCACGCGCAACA
GGAACAAACCCGACAACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Retron-Type Reverse Transcriptase; Reverse Transcriptase Family Protein; Reverse Transcriptase/Maturase; Reverse Transcriptase/Maturase Family Protein; Reverse Transcriptase; Maturase; Group II Intron Maturase; Group II Intron-Encoding Maturase; CRISPR-Associated Protein; Group II Intron/Maturase; Reverse Transcriptase Fragment; Integron/Retron-Type RNA-Directed DNA Polymerase; Reverse Transcriptase/Maturase Protein; Transposase; Group II Intron Maturase-Specific Domain Family; CRISPR-Associated Cas1 Family Protein; GBSi1 Group II Intron Maturase; Phage-Encoded Reverse Transcriptase; Group II Intron Reverse Transcriptase/Maturase

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRLISAAPYRDRVVHHALCNVIIPVFEPTLISDSYANRWGYGTHRAVQRFTQFARSSRYVLQCDIRKYFPSIDHGLLKAG
LRRKIKCPKTLWLIDQIIDHSNPQATVLEYFPGDDLLTPLAHRRGLPIGNLTSQFFANVYLNGFDHFVKEQLKTKKYVRY
VDDFALFDDSREQLVQARQAIEAYLNQLRLKIHPIKSQIVATHHGVAFLGFRIFPAHIRVQNANIRRSRKRLRKLQKAYA
QGEISATMIDQSIQSWVAHLSHADTWQLRQRIFADLVFARQ

Sequences:

>Translated_281_residues
MRLISAAPYRDRVVHHALCNVIIPVFEPTLISDSYANRWGYGTHRAVQRFTQFARSSRYVLQCDIRKYFPSIDHGLLKAG
LRRKIKCPKTLWLIDQIIDHSNPQATVLEYFPGDDLLTPLAHRRGLPIGNLTSQFFANVYLNGFDHFVKEQLKTKKYVRY
VDDFALFDDSREQLVQARQAIEAYLNQLRLKIHPIKSQIVATHHGVAFLGFRIFPAHIRVQNANIRRSRKRLRKLQKAYA
QGEISATMIDQSIQSWVAHLSHADTWQLRQRIFADLVFARQ
>Mature_281_residues
MRLISAAPYRDRVVHHALCNVIIPVFEPTLISDSYANRWGYGTHRAVQRFTQFARSSRYVLQCDIRKYFPSIDHGLLKAG
LRRKIKCPKTLWLIDQIIDHSNPQATVLEYFPGDDLLTPLAHRRGLPIGNLTSQFFANVYLNGFDHFVKEQLKTKKYVRY
VDDFALFDDSREQLVQARQAIEAYLNQLRLKIHPIKSQIVATHHGVAFLGFRIFPAHIRVQNANIRRSRKRLRKLQKAYA
QGEISATMIDQSIQSWVAHLSHADTWQLRQRIFADLVFARQ

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32719; Mature: 32719

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLISAAPYRDRVVHHALCNVIIPVFEPTLISDSYANRWGYGTHRAVQRFTQFARSSRYV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCEE
LQCDIRKYFPSIDHGLLKAGLRRKIKCPKTLWLIDQIIDHSNPQATVLEYFPGDDLLTPL
EEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
AHRRGLPIGNLTSQFFANVYLNGFDHFVKEQLKTKKYVRYVDDFALFDDSREQLVQARQA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IEAYLNQLRLKIHPIKSQIVATHHGVAFLGFRIFPAHIRVQNANIRRSRKRLRKLQKAYA
HHHHHHHHHHHEEHHHHHHHHHHCCHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHH
QGEISATMIDQSIQSWVAHLSHADTWQLRQRIFADLVFARQ
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLISAAPYRDRVVHHALCNVIIPVFEPTLISDSYANRWGYGTHRAVQRFTQFARSSRYV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCEE
LQCDIRKYFPSIDHGLLKAGLRRKIKCPKTLWLIDQIIDHSNPQATVLEYFPGDDLLTPL
EEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
AHRRGLPIGNLTSQFFANVYLNGFDHFVKEQLKTKKYVRYVDDFALFDDSREQLVQARQA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IEAYLNQLRLKIHPIKSQIVATHHGVAFLGFRIFPAHIRVQNANIRRSRKRLRKLQKAYA
HHHHHHHHHHHEEHHHHHHHHHHCCHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHH
QGEISATMIDQSIQSWVAHLSHADTWQLRQRIFADLVFARQ
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA