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The map label for this gene is ymdB [C]

Identifier: 158333525

GI number: 158333525

Start: 296509

End: 297024

Strand: Direct

Name: ymdB [C]

Synonym: AM1_0319

Alternate gene names: 158333525

Gene position: 296509-297024 (Clockwise)

Preceding gene: 158333524

Following gene: 158333527

Centisome position: 4.56

GC content: 47.67

Gene sequence:

>516_bases
ATGGATACCCGAACCGAAATAGTCCAAACTGATATCACAACCCTAAAGGTAGATGCAATCGTCAATGCGGCGAATGAGTC
CTTACTCGGCGGGGGTGGCGTCGACGGAGCGATTCATCGTACAGCCGGCCCCCAACTCCTAGCAGAATGCCGAACCCTTA
AAGGCTGTAAAACGGGCCATGCCAAACTCACAAAAGGATATCAACTTCCAGCTAAGTATGTCATTCACACTGTTGGTCCG
ATTTGGCGAGGCGGGGGAGCCAATGAAGCGATTTTATTGCAAGCCTGCTATCAACGCAGTTTAGCGTTAGCCGTTGACAA
TGGGATTCAAACCATAGCCTTTCCTGCCATTAGTTGCGGAGTCTATGGATATCCGATAGATCAAGCCTGTCAAATCGCCT
TTGAAACGACCCTCAATTTCTTGCAGATGAATCAATCCATAACCCAGGTTATCTTTGCCTGCTTTGGCGACTTGATTTAT
CACACCTACCTAAAAATAGGGGAGCAGGTGAATTAA

Upstream 100 bases:

>100_bases
ACAATAGGCTGCAGGTTCGACTCCTGTCACCAGCTTGTCCCATTATTTAGGTACAGAACGATGATTCTTCTCACTAGGCG
ATTCCGAAAGGAGCGAATCC

Downstream 100 bases:

>100_bases
TAGGTGCAAAATTAGTAAGGTCCACAAAACTTAGGTGCATAAAACCTAACGGATATAAACTCTTGCTGATATGGTGTGCC
AGCATGAGAGGCTTCCAACC

Product: AraC family regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MDTRTEIVQTDITTLKVDAIVNAANESLLGGGGVDGAIHRTAGPQLLAECRTLKGCKTGHAKLTKGYQLPAKYVIHTVGP
IWRGGGANEAILLQACYQRSLALAVDNGIQTIAFPAISCGVYGYPIDQACQIAFETTLNFLQMNQSITQVIFACFGDLIY
HTYLKIGEQVN

Sequences:

>Translated_171_residues
MDTRTEIVQTDITTLKVDAIVNAANESLLGGGGVDGAIHRTAGPQLLAECRTLKGCKTGHAKLTKGYQLPAKYVIHTVGP
IWRGGGANEAILLQACYQRSLALAVDNGIQTIAFPAISCGVYGYPIDQACQIAFETTLNFLQMNQSITQVIFACFGDLIY
HTYLKIGEQVN
>Mature_171_residues
MDTRTEIVQTDITTLKVDAIVNAANESLLGGGGVDGAIHRTAGPQLLAECRTLKGCKTGHAKLTKGYQLPAKYVIHTVGP
IWRGGGANEAILLQACYQRSLALAVDNGIQTIAFPAISCGVYGYPIDQACQIAFETTLNFLQMNQSITQVIFACFGDLIY
HTYLKIGEQVN

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=158, Percent_Identity=56.9620253164557, Blast_Score=175, Evalue=2e-44,
Organism=Homo sapiens, GI13569840, Length=155, Percent_Identity=52.258064516129, Blast_Score=167, Evalue=3e-42,
Organism=Homo sapiens, GI207450721, Length=159, Percent_Identity=40.8805031446541, Blast_Score=114, Evalue=4e-26,
Organism=Homo sapiens, GI8923143, Length=159, Percent_Identity=40.8805031446541, Blast_Score=114, Evalue=5e-26,
Organism=Homo sapiens, GI154813199, Length=130, Percent_Identity=39.2307692307692, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI20336746, Length=158, Percent_Identity=31.6455696202532, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI226371718, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371716, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371714, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371712, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371710, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371706, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI93141018, Length=161, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI93141020, Length=161, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI4758496, Length=161, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=5e-13,
Organism=Escherichia coli, GI1787283, Length=170, Percent_Identity=52.3529411764706, Blast_Score=171, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=165, Percent_Identity=46.0606060606061, Blast_Score=132, Evalue=9e-32,
Organism=Drosophila melanogaster, GI24586353, Length=165, Percent_Identity=37.5757575757576, Blast_Score=100, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18376; Mature: 18376

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRTEIVQTDITTLKVDAIVNAANESLLGGGGVDGAIHRTAGPQLLAECRTLKGCKTGH
CCCHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCC
AKLTKGYQLPAKYVIHTVGPIWRGGGANEAILLQACYQRSLALAVDNGIQTIAFPAISCG
HHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEHHHHHHCC
VYGYPIDQACQIAFETTLNFLQMNQSITQVIFACFGDLIYHTYLKIGEQVN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDTRTEIVQTDITTLKVDAIVNAANESLLGGGGVDGAIHRTAGPQLLAECRTLKGCKTGH
CCCHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCC
AKLTKGYQLPAKYVIHTVGPIWRGGGANEAILLQACYQRSLALAVDNGIQTIAFPAISCG
HHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEHHHHHHCC
VYGYPIDQACQIAFETTLNFLQMNQSITQVIFACFGDLIYHTYLKIGEQVN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]