Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 158333513

GI number: 158333513

Start: 284694

End: 285965

Strand: Reverse

Name: bphB [H]

Synonym: AM1_0285

Alternate gene names: 158333513

Gene position: 285965-284694 (Counterclockwise)

Preceding gene: 158333514

Following gene: 158333512

Centisome position: 4.4

GC content: 48.66

Gene sequence:

>1272_bases
ATGGCCAAGTCACTCAAATCAAAGCAAACAAAACCCGAACAAGAGGGAGAACGTTCCTCCACCGCCTTACCGCAGGAAGG
TGAGATTATCCGCGTGTTGCTGGTTGAGGATAATCCTGGGGATGCCTTCTTGATTCAGGGCATGCTGGGAGTCAAGCGGA
GCGAAGACGCCGTTCAATACGAAATCACCCACGTCGATAAACTTGAGGATGCTTTGCAAACCCTGGCCAAAAAAGACTTT
AATGTCGTTTTGCTGGATTTGTCGTTACCAGATAGTCATGGGTTAACCACCTTAGAGAAGGTGGTTGCTCAAAGTCCCGT
TCTCCCGATTGTGGTGTTCACAGGCTTAGATGACGAGACGGTGGCCATGCAGGCCGTTCAACAAGGGGCCCAAGATTTCT
TAGTGAAAGGCCAAGTGACACCAGGCTCCTTAATCCATGCCATTCGATATTCCATTGAGCGTCAACAAAATGAGCTGGCC
CTCAAGCAAAAAACCATTGAATTGGAGCGCCTCAATAAAGAACTCCGTAAACGGTCCTTGGAGTTAGAAGCAGCCAATAC
TGAACTGGAAGCCTTTAACTACACCGTCTCCCATGATCTGCGCAATCCTTTAACTGGGATTAAAACAGGCTGTGCCTTAC
TGACGGCCTATATGGGGGATGAAGATCCCCGATTACAAAAATATCTGGGCACAATCCAAGACTACACCCGGCACATGGCC
ACCTTACTGGAAGGGCTCTTGCAGCTATCGAATATTGGTCGCAACCCGATCCAGGCCCAGGTGGTGAATTTAAGCTCTAC
AGTACAAACCATTGCCAGACAGCTCTTGCAGCAAGAGCCCAAGCGGAACGTCAAATTTGTTATCGAACCCCAAGTGAATG
TAGAGGGGGATACCCATCTGCTCTGGGTGGCCCTAGAAAACTTATTGGGGAACGCCTGGAAGTATACTGGGGCACTGGAA
CATGCCCAAATTGAATTTGGCAAAACCACCTTAACCCATGTCAGCCGACAGCCCTTGAACGCGGCTGAAACCATTGCTCC
CAATCAGCCTATCTATTTTGTTAAGGACAATGGGGCCGGATTTGATATGAGCCATGCGGAACGGATCTTTTTGCCCTTCC
AACGACTTACCAATTCTGAAGACTTTTCGGGTAGTGGGATTGGCCTCTCAACGGTGCAACGCATCATCCACTGCCATGGT
GGGCAAATTTGGTTTGATGCAGTGGTAAATCAAGGTGCTACATTTTATTGGACCCTGGCTTACAAACAATAA

Upstream 100 bases:

>100_bases
AAGCACAGGATATTCAAGATTTTTGGTTGCAATGGCAAGGGCGTAATTAATGAACCTATTCAAACTGCATAAAGGAATGT
CTACCCCCTCTTAGGAAATA

Downstream 100 bases:

>100_bases
ACTCCAGGGTGCGCCTATATGTCGACACCCAAAGCCTCTCCTTCTCTAGACCGCACTACAGCTGCCCCTTTTGTGGAAGT
CCTGGTTGACTGTCCTGGCA

Product: two-component hybrid histidine kinase sensor and regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MAKSLKSKQTKPEQEGERSSTALPQEGEIIRVLLVEDNPGDAFLIQGMLGVKRSEDAVQYEITHVDKLEDALQTLAKKDF
NVVLLDLSLPDSHGLTTLEKVVAQSPVLPIVVFTGLDDETVAMQAVQQGAQDFLVKGQVTPGSLIHAIRYSIERQQNELA
LKQKTIELERLNKELRKRSLELEAANTELEAFNYTVSHDLRNPLTGIKTGCALLTAYMGDEDPRLQKYLGTIQDYTRHMA
TLLEGLLQLSNIGRNPIQAQVVNLSSTVQTIARQLLQQEPKRNVKFVIEPQVNVEGDTHLLWVALENLLGNAWKYTGALE
HAQIEFGKTTLTHVSRQPLNAAETIAPNQPIYFVKDNGAGFDMSHAERIFLPFQRLTNSEDFSGSGIGLSTVQRIIHCHG
GQIWFDAVVNQGATFYWTLAYKQ

Sequences:

>Translated_423_residues
MAKSLKSKQTKPEQEGERSSTALPQEGEIIRVLLVEDNPGDAFLIQGMLGVKRSEDAVQYEITHVDKLEDALQTLAKKDF
NVVLLDLSLPDSHGLTTLEKVVAQSPVLPIVVFTGLDDETVAMQAVQQGAQDFLVKGQVTPGSLIHAIRYSIERQQNELA
LKQKTIELERLNKELRKRSLELEAANTELEAFNYTVSHDLRNPLTGIKTGCALLTAYMGDEDPRLQKYLGTIQDYTRHMA
TLLEGLLQLSNIGRNPIQAQVVNLSSTVQTIARQLLQQEPKRNVKFVIEPQVNVEGDTHLLWVALENLLGNAWKYTGALE
HAQIEFGKTTLTHVSRQPLNAAETIAPNQPIYFVKDNGAGFDMSHAERIFLPFQRLTNSEDFSGSGIGLSTVQRIIHCHG
GQIWFDAVVNQGATFYWTLAYKQ
>Mature_422_residues
AKSLKSKQTKPEQEGERSSTALPQEGEIIRVLLVEDNPGDAFLIQGMLGVKRSEDAVQYEITHVDKLEDALQTLAKKDFN
VVLLDLSLPDSHGLTTLEKVVAQSPVLPIVVFTGLDDETVAMQAVQQGAQDFLVKGQVTPGSLIHAIRYSIERQQNELAL
KQKTIELERLNKELRKRSLELEAANTELEAFNYTVSHDLRNPLTGIKTGCALLTAYMGDEDPRLQKYLGTIQDYTRHMAT
LLEGLLQLSNIGRNPIQAQVVNLSSTVQTIARQLLQQEPKRNVKFVIEPQVNVEGDTHLLWVALENLLGNAWKYTGALEH
AQIEFGKTTLTHVSRQPLNAAETIAPNQPIYFVKDNGAGFDMSHAERIFLPFQRLTNSEDFSGSGIGLSTVQRIIHCHGG
QIWFDAVVNQGATFYWTLAYKQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=250, Percent_Identity=28, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994928, Length=261, Percent_Identity=25.2873563218391, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786600, Length=236, Percent_Identity=27.5423728813559, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 47151; Mature: 47020

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSLKSKQTKPEQEGERSSTALPQEGEIIRVLLVEDNPGDAFLIQGMLGVKRSEDAVQY
CCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEHHHCCCCCCCCEEE
EITHVDKLEDALQTLAKKDFNVVLLDLSLPDSHGLTTLEKVVAQSPVLPIVVFTGLDDET
EEHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCHH
VAMQAVQQGAQDFLVKGQVTPGSLIHAIRYSIERQQNELALKQKTIELERLNKELRKRSL
HHHHHHHHCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ELEAANTELEAFNYTVSHDLRNPLTGIKTGCALLTAYMGDEDPRLQKYLGTIQDYTRHMA
EEEECCCEEEHEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TLLEGLLQLSNIGRNPIQAQVVNLSSTVQTIARQLLQQEPKRNVKFVIEPQVNVEGDTHL
HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEE
LWVALENLLGNAWKYTGALEHAQIEFGKTTLTHVSRQPLNAAETIAPNQPIYFVKDNGAG
HHHHHHHHHCCCEECCCCCCCCEEECCCHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCC
FDMSHAERIFLPFQRLTNSEDFSGSGIGLSTVQRIIHCHGGQIWFDAVVNQGATFYWTLA
CCCCCCHHEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCCCEEEEEEE
YKQ
ECC
>Mature Secondary Structure 
AKSLKSKQTKPEQEGERSSTALPQEGEIIRVLLVEDNPGDAFLIQGMLGVKRSEDAVQY
CCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEHHHCCCCCCCCEEE
EITHVDKLEDALQTLAKKDFNVVLLDLSLPDSHGLTTLEKVVAQSPVLPIVVFTGLDDET
EEHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCHH
VAMQAVQQGAQDFLVKGQVTPGSLIHAIRYSIERQQNELALKQKTIELERLNKELRKRSL
HHHHHHHHCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ELEAANTELEAFNYTVSHDLRNPLTGIKTGCALLTAYMGDEDPRLQKYLGTIQDYTRHMA
EEEECCCEEEHEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TLLEGLLQLSNIGRNPIQAQVVNLSSTVQTIARQLLQQEPKRNVKFVIEPQVNVEGDTHL
HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEE
LWVALENLLGNAWKYTGALEHAQIEFGKTTLTHVSRQPLNAAETIAPNQPIYFVKDNGAG
HHHHHHHHHCCCEECCCCCCCCEEECCCHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCC
FDMSHAERIFLPFQRLTNSEDFSGSGIGLSTVQRIIHCHGGQIWFDAVVNQGATFYWTLA
CCCCCCHHEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCCCEEEEEEE
YKQ
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]