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The map label for this gene is intZ [H]

Identifier: 158333473

GI number: 158333473

Start: 241892

End: 243091

Strand: Reverse

Name: intZ [H]

Synonym: AM1_0245

Alternate gene names: 158333473

Gene position: 243091-241892 (Counterclockwise)

Preceding gene: 158333474

Following gene: 158333472

Centisome position: 3.74

GC content: 48.75

Gene sequence:

>1200_bases
ATGGCTACTAATAGACTAACGGATCTACAGGTCCGAAACGCTAAACCCAAGACTGGCTCTTATAGACTGTCTGATGGTGG
TGGCTTGTTTTTGCAAATCACCCCGGCTGGTGGGAAGCACTGGAAGTACAGGTACAGAATCCAAGGAAAAGAATCCACGT
TCAGCATTGGATCTTATCCAGAATTAGGGCTAGGTGAGGCACGAGCTAAGCACCTAGAAGCTAGACGGCTAGTGGCTCAG
GGTCTTAACCCTACTACTGAGGCCAAGAGATTGCAGTTATCGTTACAGCTAGCCCAAGGCAACACATTTGAATTTGTGGC
TGATGAATGGTTCAGTCAAAAGAATGCTGGTTGGTCTGAGAGTTATCGCGGAATAGTAAGGAATCGGTTGAATAGGGATT
TAAATCCAAGCTTAGGGCCGAGGCCAGTCACAGAGATTACAGCCCCTGAAGTGTTGGCGGTTATTAGGGCTGTTGAAGCT
AGAGGAGCTAATGCACTGGCTCATAAATGTCTGTCTATTGTGAGGATGGTGCTGGGTTATGCCGTGGCTACAGGTCGATG
TGATCGCAATGTAGTCAATGATTTGGGCGGCGCACTGGCCCCGGTGGACGCAAAACATAGAGCTGCTATCACAGATCCTA
AAAGAGTTGGTGAGCTGATGCGGATGATCGCTGACTATCGGGGTTCGATGGTGGTCCGGGCAGCTATGCGAATGGGGGCT
TTAACGTTTGTTAGACCCGGTGAGCTTCGGACGATGCAATGGTCACAAATCAATTGGAATACTAAAGAATGGCGGTTTCA
AGTGTCCAAAACAGAGACCGATCATATAGTGCCCTTAGCTACTCAAGCGATCGAGATACTGCAGACTCTGCAGTTGATAA
CGGGCAATGGCACAAGTCGATATGTTTTTCCCAGTGCTAACAGCATGACCCGGCACATGAGTAATAACGCCGTGCTGGCT
GCACTACGGGCGATGGGCATTACTAAAGATGAAATGTCAGGTCATGGGTTCAGAGCTATGGCGAGGACTCTAATTGCTGA
AGAATTGCACTACCGACCGGAGCTTATTGAGCATCAACTTGCACATGCAGTTCGGGGTCCTTTGGGGCGTGCATATAATA
GGACCGAGTTTCTTGAAGAACGGCGGGAAATGATGCAGGCTTGGGCCGATTATTTGGATGAGCTGGAAAGAGATTGTTAG

Upstream 100 bases:

>100_bases
AATCTACCATTAGCCAAGGTGATCTATCTGCATCTAAAAAAACTGTGGGTTAATTTGTGGGTCGTTTTAGAGGAGCGGCT
TGTAGTTAGCCCACATTTTT

Downstream 100 bases:

>100_bases
CCAGATCAGCTGATGATTTTTATCTGAACAGAGGATTTCACTTAGAGGTTAAGGTGGTGGCAGCTTTGGAGGACTTCTAA
TGGCAGGGCGCAAAAAGAAG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MATNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYPELGLGEARAKHLEARRLVAQ
GLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSESYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEA
RGANALAHKCLSIVRMVLGYAVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGA
LTFVRPGELRTMQWSQINWNTKEWRFQVSKTETDHIVPLATQAIEILQTLQLITGNGTSRYVFPSANSMTRHMSNNAVLA
ALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQLAHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELERDC

Sequences:

>Translated_399_residues
MATNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYPELGLGEARAKHLEARRLVAQ
GLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSESYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEA
RGANALAHKCLSIVRMVLGYAVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGA
LTFVRPGELRTMQWSQINWNTKEWRFQVSKTETDHIVPLATQAIEILQTLQLITGNGTSRYVFPSANSMTRHMSNNAVLA
ALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQLAHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELERDC
>Mature_398_residues
ATNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYPELGLGEARAKHLEARRLVAQG
LNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSESYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEAR
GANALAHKCLSIVRMVLGYAVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGAL
TFVRPGELRTMQWSQINWNTKEWRFQVSKTETDHIVPLATQAIEILQTLQLITGNGTSRYVFPSANSMTRHMSNNAVLAA
LRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQLAHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELERDC

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=404, Percent_Identity=36.3861386138614, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1788974, Length=394, Percent_Identity=33.248730964467, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1788690, Length=391, Percent_Identity=34.7826086956522, Blast_Score=217, Evalue=9e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44746; Mature: 44615

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYP
CCCCCCCCEEEECCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCC
ELGLGEARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSE
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEEECCCCCEEHHHHHHHHHCCCCHHH
SYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRMVLGY
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGA
HHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
LTFVRPGELRTMQWSQINWNTKEWRFQVSKTETDHIVPLATQAIEILQTLQLITGNGTSR
EEEECCCCCCEEEECCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCE
YVFPSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQL
EEECCCCHHHHHHCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
AHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELERDC
HHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATNRLTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYP
CCCCCCCEEEECCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCC
ELGLGEARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSE
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEEECCCCCEEHHHHHHHHHCCCCHHH
SYRGIVRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRMVLGY
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AVATGRCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGA
HHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
LTFVRPGELRTMQWSQINWNTKEWRFQVSKTETDHIVPLATQAIEILQTLQLITGNGTSR
EEEECCCCCCEEEECCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCE
YVFPSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQL
EEECCCCHHHHHHCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
AHAVRGPLGRAYNRTEFLEERREMMQAWADYLDELERDC
HHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]