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The map label for this gene is yciR [C]

Identifier: 158333421

GI number: 158333421

Start: 193206

End: 193655

Strand: Direct

Name: yciR [C]

Synonym: AM1_0193

Alternate gene names: 158333421

Gene position: 193206-193655 (Clockwise)

Preceding gene: 158333411

Following gene: 158333423

Centisome position: 2.97

GC content: 46.0

Gene sequence:

>450_bases
TTGGAGGATGCCATTGAGCAATCGACCTCTCTAGCGGTGATGTTTTTAGATCTGGATCGGTTTAAAGAGGTCAACGATGC
TTTGGGCCATGCCATTGGTGATCGTCTACTAAACATAGTGGTTCAACGACTTTCGGGTTGCCTCCGCACGATGGATGTTA
TTGCCCGTTGGGGTGGAGATGAATTTATTCTGCTGCAACCCCAAATTTCTGGTCGGAATGATGCGGGTGAAATCGCTCAT
CGTTTGATTGACGTGTTGCAGTCAGATACCTGCATACAGGGCAACGCTATCAACGTTACAGTTAGTGTCGGTATTGCTCT
GTATCCCGAGGATGGTTCAGATGCGTGCACTCTTGTTCAATGTGCTGATATAGCCTTATATCGAGCTAAAAATTCTGGAC
GCAATAACTATCAGTACTATTCCACTGATGTGATGGTGAGCGAACTGTAA

Upstream 100 bases:

>100_bases
AGGAAAAAAAGCTAATGCTGAATTCAGGCATCAGGCACTCCATGCCGCCCTCACAGGTTTGCCAAATCGGGGTTGGTTTG
ATCAGTTACTCAGGGACTCC

Downstream 100 bases:

>100_bases
AGAGTTCTTTCCATCATGATATTGATCATAATAAACGCTTATTTTTGCTCTAGGTTTACTCTTTCATAAGTCTAAATTTA
GTAGACTTTATTAGATTTTT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MEDAIEQSTSLAVMFLDLDRFKEVNDALGHAIGDRLLNIVVQRLSGCLRTMDVIARWGGDEFILLQPQISGRNDAGEIAH
RLIDVLQSDTCIQGNAINVTVSVGIALYPEDGSDACTLVQCADIALYRAKNSGRNNYQYYSTDVMVSEL

Sequences:

>Translated_149_residues
MEDAIEQSTSLAVMFLDLDRFKEVNDALGHAIGDRLLNIVVQRLSGCLRTMDVIARWGGDEFILLQPQISGRNDAGEIAH
RLIDVLQSDTCIQGNAINVTVSVGIALYPEDGSDACTLVQCADIALYRAKNSGRNNYQYYSTDVMVSEL
>Mature_149_residues
MEDAIEQSTSLAVMFLDLDRFKEVNDALGHAIGDRLLNIVVQRLSGCLRTMDVIARWGGDEFILLQPQISGRNDAGEIAH
RLIDVLQSDTCIQGNAINVTVSVGIALYPEDGSDACTLVQCADIALYRAKNSGRNNYQYYSTDVMVSEL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=150, Percent_Identity=38, Blast_Score=94, Evalue=4e-21,
Organism=Escherichia coli, GI1788381, Length=130, Percent_Identity=42.3076923076923, Blast_Score=86, Evalue=8e-19,
Organism=Escherichia coli, GI87081881, Length=133, Percent_Identity=40.6015037593985, Blast_Score=83, Evalue=7e-18,
Organism=Escherichia coli, GI145693134, Length=138, Percent_Identity=34.7826086956522, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=138, Percent_Identity=34.7826086956522, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=128, Percent_Identity=36.71875, Blast_Score=74, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=135, Percent_Identity=36.2962962962963, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1786584, Length=131, Percent_Identity=32.824427480916, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=140, Percent_Identity=32.1428571428571, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=134, Percent_Identity=34.3283582089552, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 16370; Mature: 16370

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDAIEQSTSLAVMFLDLDRFKEVNDALGHAIGDRLLNIVVQRLSGCLRTMDVIARWGGD
CCCHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EFILLQPQISGRNDAGEIAHRLIDVLQSDTCIQGNAINVTVSVGIALYPEDGSDACTLVQ
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEEEEEEEEECCCCCCHHHHHH
CADIALYRAKNSGRNNYQYYSTDVMVSEL
HHHHHEEECCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MEDAIEQSTSLAVMFLDLDRFKEVNDALGHAIGDRLLNIVVQRLSGCLRTMDVIARWGGD
CCCHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EFILLQPQISGRNDAGEIAHRLIDVLQSDTCIQGNAINVTVSVGIALYPEDGSDACTLVQ
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEEEEEEEEECCCCCCHHHHHH
CADIALYRAKNSGRNNYQYYSTDVMVSEL
HHHHHEEECCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]