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The map label for this gene is secD [H]

Identifier: 158333315

GI number: 158333315

Start: 91200

End: 92054

Strand: Reverse

Name: secD [H]

Synonym: AM1_0085

Alternate gene names: 158333315

Gene position: 92054-91200 (Counterclockwise)

Preceding gene: 158333317

Following gene: 158333304

Centisome position: 1.42

GC content: 46.32

Gene sequence:

>855_bases
TTGCTCGCATTAACGACAGCGACTCAATGTGCTGACGTTGATTTGTGGTCTCAATTTCCGATTTCTATCCCTCCAACCGT
TTCTTCTACACAACTATGCCCCTTTCAAGGCACTGAACTTACGCTTCGAATGGGAGAAGCCTACGAAGACAAGATATCTC
GTGAGCAAGCCTTTGACCAAGTTCAAACGGTTTTAAGGGAGCGATTGTTGAATCTGGGACAGGTATCGGTTGGTTTTATC
CCCCTGCCCCCCGATCAATTTTTAATTCAGCTGCCTAGTCAGCTGGATCAACGCCAAGCTTTGCAGCGAATCACTCAGCG
ATCTCATTTAACGTTTCGTCTACACAATCCAACGACTCCTCAAACCGAATCCCTGATACTTCAAAAGATAGAGCTTCAAC
CTAAATTGGACGCAAAGTCATCCGATCTCCGTCAAATTGAAAAGCAGCTAGCCCAGATCTACAAAAAACTATATGGCCCG
CCCGTGTTAACCGATAAGAATTTGATTGATGCATCGTACCAGATTGCTTCTGTGGGGCATCTTTGGGATGTCACGCTCCG
GTTTGATGCCCAAGGTGCTGAACAATTTGAGCAAATCACTCAGAAAATGGCTGGTACCCAGCGACCCATCGGCTTTTTTC
TGGACGATCAACTATTAAGTGAAGCAACTGTTTCCTCTCAGTTTGCTAAAACAGGGATTTCTGGGGGAGCTGCGGTCATT
ACTGGCAACTTTGATTTGGAGACGGCAAAAAACTTGGCCTTCCAGTTGAAAGAAGGTAGCTTGCCTGCACCGATCACGGT
TTTAAAAATAGAAGCTGTACAGACGGAACAATGCCCTTCTACCCCCCAGGTCTAG

Upstream 100 bases:

>100_bases
GGGGATCGGTTCAATGATCTTAGGGTGATTTAGCATGGAGAGATAAATCGAGATGGGAGTGCTTATGCCCTATAGCTTGC
AGTCCGGAATCGCATCAGCA

Downstream 100 bases:

>100_bases
GAAGCTGCCAGTTTCTAGGAACTGATAAGCTCTGGAGGCAAGTTCAGTCCATCGATACTTTGGAAAAAGGAAGTGAGTTT
AGCCGAAATACTGGCCACAC

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MLALTTATQCADVDLWSQFPISIPPTVSSTQLCPFQGTELTLRMGEAYEDKISREQAFDQVQTVLRERLLNLGQVSVGFI
PLPPDQFLIQLPSQLDQRQALQRITQRSHLTFRLHNPTTPQTESLILQKIELQPKLDAKSSDLRQIEKQLAQIYKKLYGP
PVLTDKNLIDASYQIASVGHLWDVTLRFDAQGAEQFEQITQKMAGTQRPIGFFLDDQLLSEATVSSQFAKTGISGGAAVI
TGNFDLETAKNLAFQLKEGSLPAPITVLKIEAVQTEQCPSTPQV

Sequences:

>Translated_284_residues
MLALTTATQCADVDLWSQFPISIPPTVSSTQLCPFQGTELTLRMGEAYEDKISREQAFDQVQTVLRERLLNLGQVSVGFI
PLPPDQFLIQLPSQLDQRQALQRITQRSHLTFRLHNPTTPQTESLILQKIELQPKLDAKSSDLRQIEKQLAQIYKKLYGP
PVLTDKNLIDASYQIASVGHLWDVTLRFDAQGAEQFEQITQKMAGTQRPIGFFLDDQLLSEATVSSQFAKTGISGGAAVI
TGNFDLETAKNLAFQLKEGSLPAPITVLKIEAVQTEQCPSTPQV
>Mature_284_residues
MLALTTATQCADVDLWSQFPISIPPTVSSTQLCPFQGTELTLRMGEAYEDKISREQAFDQVQTVLRERLLNLGQVSVGFI
PLPPDQFLIQLPSQLDQRQALQRITQRSHLTFRLHNPTTPQTESLILQKIELQPKLDAKSSDLRQIEKQLAQIYKKLYGP
PVLTDKNLIDASYQIASVGHLWDVTLRFDAQGAEQFEQITQKMAGTQRPIGFFLDDQLLSEATVSSQFAKTGISGGAAVI
TGNFDLETAKNLAFQLKEGSLPAPITVLKIEAVQTEQCPSTPQV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 31536; Mature: 31536

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALTTATQCADVDLWSQFPISIPPTVSSTQLCPFQGTELTLRMGEAYEDKISREQAFDQ
CEEECCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHH
VQTVLRERLLNLGQVSVGFIPLPPDQFLIQLPSQLDQRQALQRITQRSHLTFRLHNPTTP
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
QTESLILQKIELQPKLDAKSSDLRQIEKQLAQIYKKLYGPPVLTDKNLIDASYQIASVGH
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHEECCC
LWDVTLRFDAQGAEQFEQITQKMAGTQRPIGFFLDDQLLSEATVSSQFAKTGISGGAAVI
EEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEE
TGNFDLETAKNLAFQLKEGSLPAPITVLKIEAVQTEQCPSTPQV
ECCCCHHHHHHHHEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLALTTATQCADVDLWSQFPISIPPTVSSTQLCPFQGTELTLRMGEAYEDKISREQAFDQ
CEEECCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHH
VQTVLRERLLNLGQVSVGFIPLPPDQFLIQLPSQLDQRQALQRITQRSHLTFRLHNPTTP
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
QTESLILQKIELQPKLDAKSSDLRQIEKQLAQIYKKLYGPPVLTDKNLIDASYQIASVGH
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHEECCC
LWDVTLRFDAQGAEQFEQITQKMAGTQRPIGFFLDDQLLSEATVSSQFAKTGISGGAAVI
EEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEE
TGNFDLETAKNLAFQLKEGSLPAPITVLKIEAVQTEQCPSTPQV
ECCCCHHHHHHHHEEECCCCCCCCEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]