Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 158333266

GI number: 158333266

Start: 37712

End: 38146

Strand: Reverse

Name: yqgF [C]

Synonym: AM1_0036

Alternate gene names: 158333266

Gene position: 38146-37712 (Counterclockwise)

Preceding gene: 158333267

Following gene: 158333265

Centisome position: 0.59

GC content: 48.28

Gene sequence:

>435_bases
ATGCAGCGAATATCTGCGTTAGGATTAGATCTAGGACATCGTCGGATTGGAGTTGCTGGCTGTGATGGCACGGGCTTAAT
TGCCACTGGACTCACCACGATTCGACGTACGTCTTTTACCAAAGACATGGAAATACTGCGGCAAATTGTGGTGGACCGCC
AGGTTAAAACCTTGGTCGTGGGTCTGCCCTATACGATGAAGGGTGAAGTGGGAACTCAAGCCCAAAAGACCCAGAAATTA
GCCAAGCGGATTGCTAAAGCACTTGATCTACCTTTGGATTTTATTGATGAACGATTGACTTCCCATGAGGCTGAGTCCAT
GATGCGTGAACAGCGTATCAATCCAGCCGAACAAAAGGGAATGATTGATCGCAAAGCGGCCGCGCTGATTCTACAACGTT
GGCTGGATCAAAAACCATGGCTATCTTCGACCTAG

Upstream 100 bases:

>100_bases
TTGTTGGCAAACGTCATTGTCAAGGATCTACCACGAGTCAGAATAAACAGGTTTCTTCGAAGCGAAATCAGCGCCCCTGG
CCGTCAGAATTTTAACCGGT

Downstream 100 bases:

>100_bases
ACTAGGTTCCACTATTTCGTTTTTTCGTTTAATTTTCTCGCCTATTAAGTCCATTACCCCCTAAACTTAAGCCTATGGGT
CCTGATGGTGGACCAGTAAT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVVGLPYTMKGEVGTQAQKTQKL
AKRIAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMIDRKAAALILQRWLDQKPWLSST

Sequences:

>Translated_144_residues
MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVVGLPYTMKGEVGTQAQKTQKL
AKRIAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMIDRKAAALILQRWLDQKPWLSST
>Mature_144_residues
MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVVGLPYTMKGEVGTQAQKTQKL
AKRIAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMIDRKAAALILQRWLDQKPWLSST

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=31.2977099236641, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ACAM1 (B0C512)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001514438.1
- ProteinModelPortal:   B0C512
- SMR:   B0C512
- GeneID:   5678873
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_0036
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   AMAR329726:AM1_0036-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16127; Mature: 16127

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVV
CCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPYTMKGEVGTQAQKTQKLAKRIAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKG
CCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
MIDRKAAALILQRWLDQKPWLSST
CHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVV
CCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPYTMKGEVGTQAQKTQKLAKRIAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKG
CCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
MIDRKAAALILQRWLDQKPWLSST
CHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA