| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318939
Identifier: 158318939
GI number: 158318939
Start: 8817842
End: 8819167
Strand: Reverse
Name: 158318939
Synonym: Franean1_7222
Alternate gene names: NA
Gene position: 8819167-8817842 (Counterclockwise)
Preceding gene: 158318940
Following gene: 158318937
Centisome position: 98.19
GC content: 73.15
Gene sequence:
>1326_bases ATGTTCCGGTCGCTGTCGGTCCGCAACTTCCGCCTCTTCGCATCCGGCCAGCTGGTCTCGCTGATCGGGACGTGGATGGG CATGACCACGCTCGACTGGCTGGTGCTGGCCCTCGGCGGCGGCGGGACGGAGCTGGGGATCACCCTGGCGCTCCAGTACG GCCCGATGCTGCTGTTCGGGCTCTACGCCGGCGTCGTCGCCGACCGGTTCCCCAAGCTGCGGCTGCTGCTGATCACCCAG AGCTCGGCGGCGGTGCTGTCCGTCGCCGCATGCGCGCTGATCGCTTCCGGGGCGCTGCGCATGCCGATGCTCTTCGTCCT CTCGGGCCTGCTCGGCGTGGTGACCTCCTTCGACGCTCCCATCCGGCAGGCGTTCATCGTCGAGATGGTCGGTGCCCCGC TGCTGCCGAACGCCGTCGCGCTGAACAGCATGATCTTCAACGCGGGACGGATCGCCGGACCGGCCGCGGCCGGCGGGCTT ATCGGCATCGCGGGCACCATGCCCGGCGCGGCCTGGGTGTTCGGCCTCAACGCGCTGTCGTTCGCCGCGGTGCTGACCGG CCTGGCGCGCATCCGTACCGGGGATCTCCTGCCGGCCCGACCCGTCCAGCGGGCCCGGGGGCAGCTGCGTGCGGGGCTGA GCTACGCCGTTCGGCACCGCGAGATCGCCACGCCCATCCTGCTGGTGGGCATCGTCGGCGCCCTGGGGCTGAACTTCCCC GTCACGGTCGCGCTGATGGCCAGCGAGCAGTTCAGCGGGACGGCGGCCACCTACGGCCTCCTCACGGCGATGCTGGCGGT CGGCTCCATCGCGGGCGCGGCCGTGTCGGCGCGGCGCCTGGACGTCCCCCGCCACACCACGCTCATCGTCGCGACGGCGG CCTTCGGGGTCTCGGAGACCCTGTTCGGGCTGATGCCGAACCTGTGGCTGTTCGCGCTGCTGGCCATCCCGACCGGCGCC TGTGTGCTGCTGGTCAGCACCATGGCGAACGCGCTGGTGCAGCTGAGCACCGACGATGCCATGCGGGGCCGGGTGATGGG CGTGTTCCTGCTGGTCTTCATCGGCACGACGCCGATCGGCGCCCCGATCGTCGGGGCGGTCTGCGAGGCGTTCGGGCCGC GGGCCGGCCTCGCTCTCGGTGGGGTGAGCTCGCTGCTCGCCGCCGCGATCGTCGCGCTGTTCGACCTGCGCCGCCCGCCC GCCGCGGCACGGGCAGCCGGCCCCGGCCCCGCGGGGCCGGGGCTCGCCGTGGGCGGGCTCAAAGCTCGACCCAGCCACCC CGCTTGTGAGACGCCGCGGCCGCCACCTGCAGGCGCGTCGCGGTGA
Upstream 100 bases:
>100_bases CCCCGATCCTGGACCGCCTGGCCGGCCTGTAGCCGTGGGGATGTTCCGGTAACTATGGGGACGCCACAGTAGCCATGGGA ATGGTCCGGTAGCCGTGGGG
Downstream 100 bases:
>100_bases GCAGGTCGTGGAAGGTCGCGCCGCGCACCAGGGCCGGGTCGTTCAGCTCGGTGGCCCGCACGACGTCGTAGGTGGCCTCG ACCAGGCCGGGCCGCTCGGC
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Transmembrane Efflux Protein; Facilitator Superfamily Permease; Arabinose Efflux Permease Family Protein; Multidrug ABC Transporter; Facilitator Superfamily Transporter; Macrolide-Efflux Protein; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Transporter Facilitator Family Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Transporter Facilitator Family; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Facilitator MFS1 Protein; MFS Permease; MFS Family Membrane Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Permease Of Facilitator Superfamily; Membrane Efflux Protein MFS; Transport Transmembrane Protein; MFS Superfamily Transporter; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MFRSLSVRNFRLFASGQLVSLIGTWMGMTTLDWLVLALGGGGTELGITLALQYGPMLLFGLYAGVVADRFPKLRLLLITQ SSAAVLSVAACALIASGALRMPMLFVLSGLLGVVTSFDAPIRQAFIVEMVGAPLLPNAVALNSMIFNAGRIAGPAAAGGL IGIAGTMPGAAWVFGLNALSFAAVLTGLARIRTGDLLPARPVQRARGQLRAGLSYAVRHREIATPILLVGIVGALGLNFP VTVALMASEQFSGTAATYGLLTAMLAVGSIAGAAVSARRLDVPRHTTLIVATAAFGVSETLFGLMPNLWLFALLAIPTGA CVLLVSTMANALVQLSTDDAMRGRVMGVFLLVFIGTTPIGAPIVGAVCEAFGPRAGLALGGVSSLLAAAIVALFDLRRPP AAARAAGPGPAGPGLAVGGLKARPSHPACETPRPPPAGASR
Sequences:
>Translated_441_residues MFRSLSVRNFRLFASGQLVSLIGTWMGMTTLDWLVLALGGGGTELGITLALQYGPMLLFGLYAGVVADRFPKLRLLLITQ SSAAVLSVAACALIASGALRMPMLFVLSGLLGVVTSFDAPIRQAFIVEMVGAPLLPNAVALNSMIFNAGRIAGPAAAGGL IGIAGTMPGAAWVFGLNALSFAAVLTGLARIRTGDLLPARPVQRARGQLRAGLSYAVRHREIATPILLVGIVGALGLNFP VTVALMASEQFSGTAATYGLLTAMLAVGSIAGAAVSARRLDVPRHTTLIVATAAFGVSETLFGLMPNLWLFALLAIPTGA CVLLVSTMANALVQLSTDDAMRGRVMGVFLLVFIGTTPIGAPIVGAVCEAFGPRAGLALGGVSSLLAAAIVALFDLRRPP AAARAAGPGPAGPGLAVGGLKARPSHPACETPRPPPAGASR >Mature_441_residues MFRSLSVRNFRLFASGQLVSLIGTWMGMTTLDWLVLALGGGGTELGITLALQYGPMLLFGLYAGVVADRFPKLRLLLITQ SSAAVLSVAACALIASGALRMPMLFVLSGLLGVVTSFDAPIRQAFIVEMVGAPLLPNAVALNSMIFNAGRIAGPAAAGGL IGIAGTMPGAAWVFGLNALSFAAVLTGLARIRTGDLLPARPVQRARGQLRAGLSYAVRHREIATPILLVGIVGALGLNFP VTVALMASEQFSGTAATYGLLTAMLAVGSIAGAAVSARRLDVPRHTTLIVATAAFGVSETLFGLMPNLWLFALLAIPTGA CVLLVSTMANALVQLSTDDAMRGRVMGVFLLVFIGTTPIGAPIVGAVCEAFGPRAGLALGGVSSLLAAAIVALFDLRRPP AAARAAGPGPAGPGLAVGGLKARPSHPACETPRPPPAGASR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44887; Mature: 44887
Theoretical pI: Translated: 11.76; Mature: 11.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRSLSVRNFRLFASGQLVSLIGTWMGMTTLDWLVLALGGGGTELGITLALQYGPMLLFG CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHH LYAGVVADRFPKLRLLLITQSSAAVLSVAACALIASGALRMPMLFVLSGLLGVVTSFDAP HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHH IRQAFIVEMVGAPLLPNAVALNSMIFNAGRIAGPAAAGGLIGIAGTMPGAAWVFGLNALS HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCEEECCCCCCHHHHHHHHHHH FAAVLTGLARIRTGDLLPARPVQRARGQLRAGLSYAVRHREIATPILLVGIVGALGLNFP HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VTVALMASEQFSGTAATYGLLTAMLAVGSIAGAAVSARRLDVPRHTTLIVATAAFGVSET EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHH LFGLMPNLWLFALLAIPTGACVLLVSTMANALVQLSTDDAMRGRVMGVFLLVFIGTTPIG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCCCC APIVGAVCEAFGPRAGLALGGVSSLLAAAIVALFDLRRPPAAARAAGPGPAGPGLAVGGL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEECCC KARPSHPACETPRPPPAGASR CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFRSLSVRNFRLFASGQLVSLIGTWMGMTTLDWLVLALGGGGTELGITLALQYGPMLLFG CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHH LYAGVVADRFPKLRLLLITQSSAAVLSVAACALIASGALRMPMLFVLSGLLGVVTSFDAP HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHH IRQAFIVEMVGAPLLPNAVALNSMIFNAGRIAGPAAAGGLIGIAGTMPGAAWVFGLNALS HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCEEECCCCCCHHHHHHHHHHH FAAVLTGLARIRTGDLLPARPVQRARGQLRAGLSYAVRHREIATPILLVGIVGALGLNFP HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VTVALMASEQFSGTAATYGLLTAMLAVGSIAGAAVSARRLDVPRHTTLIVATAAFGVSET EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHH LFGLMPNLWLFALLAIPTGACVLLVSTMANALVQLSTDDAMRGRVMGVFLLVFIGTTPIG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCCCC APIVGAVCEAFGPRAGLALGGVSSLLAAAIVALFDLRRPPAAARAAGPGPAGPGLAVGGL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEECCC KARPSHPACETPRPPPAGASR CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA