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The map label for this gene is scoP [H]

Identifier: 158318915

GI number: 158318915

Start: 8790801

End: 8791544

Strand: Direct

Name: scoP [H]

Synonym: Franean1_7198

Alternate gene names: 158318915

Gene position: 8790801-8791544 (Clockwise)

Preceding gene: 158318914

Following gene: 158318916

Centisome position: 97.87

GC content: 74.46

Gene sequence:

>744_bases
ATGCGGCCTGAGCGACCTGAGCGGCCTGAGCCTCGACGGGGCCGCCAGGATCTGCGGGGCCGACAGCGCGGGCGGCGTGG
GCCGACGTCCACCGGCCTGGCGTGCGCCGCGACGGCGGCCGTGCTGCTGTTCACCGGGGCGGCCTGCGGCTCCGGGGGCG
ACGGCTCGTCCGGCCCGGCCGTGGTCGATCTCAGCGAGGCCAGCAGGGCGGCCGGGGTGCGCGGTGTGTCTCTCGGTACC
CCCGTCGCGAAGCCCACCACGACGCTGATCGACACCGCCGGGGCGCCGTTCGACCTGCGGACGGACCAGGCGACCGCCGG
CCGGGTCACGCTGGTGTTCTTCGGGTTCACGAACTGCCCCGACATCTGCCCGACCACCATGGCCGACCTCGACGCGGCGC
TGGAGAGCCTCCCCGCGGCCGACCGCGACCGGATCCGGGTCGTGTTCGTCTCGACCGACCCGGACCGCGACACCGGGCCG
GTCATCCGCCGCTGGCTGGACCAGTTCGACGCGTCCTTCATCGGCCTGACCGGCGCCTGGCCGCACATCAAGGAGTTCGC
CGACGCACTGGACGTCGCGATCGAGCCGGCGGTGCGAGAGGCCGACGGCACCGTGAACGTGACGCACAGCGCGCAGGTGA
CCGCGTTCAGCCCGGACGGCACCGCCCGGGTCGCCTACCTGACGGGCACCTCGGTCGCCGACTACGCCCACGACCTGCCG
TTGCTGGCCCGCGGCGAGACCTGA

Upstream 100 bases:

>100_bases
CTCTGGATCAAGACCCCTGGTGCCAGCGACGGCGAGTGCGGACGCGGCAACCCCGCGGCCGGCGCCTGGTGGCAACAGCA
GGCGGAGGAGCTGGTCCGCA

Downstream 100 bases:

>100_bases
CCCGCACCTGCCGGCGCGGCCGCCCGTCGGGCGCGACAGGACGGCGTCCTGTCCAGTGCGGCCGGCCGCCCGCCGTGACG
GCCAGGCGACTGTGCGGCCC

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MRPERPERPEPRRGRQDLRGRQRGRRGPTSTGLACAATAAVLLFTGAACGSGGDGSSGPAVVDLSEASRAAGVRGVSLGT
PVAKPTTTLIDTAGAPFDLRTDQATAGRVTLVFFGFTNCPDICPTTMADLDAALESLPAADRDRIRVVFVSTDPDRDTGP
VIRRWLDQFDASFIGLTGAWPHIKEFADALDVAIEPAVREADGTVNVTHSAQVTAFSPDGTARVAYLTGTSVADYAHDLP
LLARGET

Sequences:

>Translated_247_residues
MRPERPERPEPRRGRQDLRGRQRGRRGPTSTGLACAATAAVLLFTGAACGSGGDGSSGPAVVDLSEASRAAGVRGVSLGT
PVAKPTTTLIDTAGAPFDLRTDQATAGRVTLVFFGFTNCPDICPTTMADLDAALESLPAADRDRIRVVFVSTDPDRDTGP
VIRRWLDQFDASFIGLTGAWPHIKEFADALDVAIEPAVREADGTVNVTHSAQVTAFSPDGTARVAYLTGTSVADYAHDLP
LLARGET
>Mature_247_residues
MRPERPERPEPRRGRQDLRGRQRGRRGPTSTGLACAATAAVLLFTGAACGSGGDGSSGPAVVDLSEASRAAGVRGVSLGT
PVAKPTTTLIDTAGAPFDLRTDQATAGRVTLVFFGFTNCPDICPTTMADLDAALESLPAADRDRIRVVFVSTDPDRDTGP
VIRRWLDQFDASFIGLTGAWPHIKEFADALDVAIEPAVREADGTVNVTHSAQVTAFSPDGTARVAYLTGTSVADYAHDLP
LLARGET

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=135, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI281182727, Length=115, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI281182722, Length=115, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI281182716, Length=115, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI153791313, Length=115, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6319498, Length=186, Percent_Identity=30.6451612903226, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=158, Percent_Identity=31.0126582278481, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19920710, Length=176, Percent_Identity=28.4090909090909, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 25933; Mature: 25933

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPERPERPEPRRGRQDLRGRQRGRRGPTSTGLACAATAAVLLFTGAACGSGGDGSSGPA
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCE
VVDLSEASRAAGVRGVSLGTPVAKPTTTLIDTAGAPFDLRTDQATAGRVTLVFFGFTNCP
EEEHHHHHHHCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCEEEEEEEECCCCC
DICPTTMADLDAALESLPAADRDRIRVVFVSTDPDRDTGPVIRRWLDQFDASFIGLTGAW
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEECCCCC
PHIKEFADALDVAIEPAVREADGTVNVTHSAQVTAFSPDGTARVAYLTGTSVADYAHDLP
HHHHHHHHHHHHHHCCHHHCCCCEEEEECCCEEEEECCCCCEEEEEEECCCHHHHHHCCC
LLARGET
EEECCCC
>Mature Secondary Structure
MRPERPERPEPRRGRQDLRGRQRGRRGPTSTGLACAATAAVLLFTGAACGSGGDGSSGPA
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCE
VVDLSEASRAAGVRGVSLGTPVAKPTTTLIDTAGAPFDLRTDQATAGRVTLVFFGFTNCP
EEEHHHHHHHCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCEEEEEEEECCCCC
DICPTTMADLDAALESLPAADRDRIRVVFVSTDPDRDTGPVIRRWLDQFDASFIGLTGAW
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEECCCCC
PHIKEFADALDVAIEPAVREADGTVNVTHSAQVTAFSPDGTARVAYLTGTSVADYAHDLP
HHHHHHHHHHHHHHCCHHHCCCCEEEEECCCEEEEECCCCCEEEEEEECCCHHHHHHCCC
LLARGET
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]