| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318898
Identifier: 158318898
GI number: 158318898
Start: 8767595
End: 8768464
Strand: Direct
Name: 158318898
Synonym: Franean1_7181
Alternate gene names: NA
Gene position: 8767595-8768464 (Clockwise)
Preceding gene: 158318897
Following gene: 158318901
Centisome position: 97.61
GC content: 75.52
Gene sequence:
>870_bases ATGTCCGACTTCCCAGCCATGGACCCGATGGACCACCCGTACCTGGAGCCGGACCTCTACCGGGGGGCGGCCAACAACAT CCCGCCGATGCTCGCCTACGACGGCGGGCAGGTCGGCACCCTCACGGTGCGAGCCGGGTCCGTGACCGCCGAGCGGCACC GGCCGCGCCGCAACGACAACGAGTCGTTCACGGTGTGGACGGACCGGGACGGTTCGGTGTGCCTGCTCGCGGTCGCGGGC GCCGTGGGGGACGGCGAGAACGCCGGGCGGGCGGCCCGGATGGCCACCGCGCTGGCCGTCCAGGCGAGCCGCCGACGGCT GGCGTCCACCGCCCCGGCCTCCGGCGCCGACCTGGCGGCTCTGGTCCGCGCCGTCACCGGTGACATCGACGCGATGTTGC ACTCCCGGGCGTCCGGCCCGGACTATCTGACCACCCTGCTGCTCGGGTTCGTGCCGACGGTGGTCGCCCCCGGCGGGTCG GTCCCCGCGGTCGTCGGACGGGTCGGTGGCCTGATGGCGTGGCGGATCCGCGCGGGCACCGTCGACCCGGTGTTCTCGCT CGCCGACCCCGGCAGTCCCGGGACGGGTGGCGCGCCCCCGCAGGTGGCCGCGCTGCCAGGCCACGGCGACGCCCTGGAGG TGCGCACCGTGACGCTGTCCGACGGCGAGGTGCTCGCCCTCACCACAGGCGGCCTAGCCAGCGGCGTCCGCGGAGAGCGG GTGACCGGCTTCCTCGGACCGCTGTGGACCGTGCCGCCGACCCCCCTCGAGTTCCTGGCCTCGCTGGCGGTACGCCGCAA CGACCGCGACGACGACCGGACGGCGGCCGTGGCCTGGCTCGGTCATCACGAGTCGAGGCCGGGCCGGTAG
Upstream 100 bases:
>100_bases CACAGCGCCACCGGCGCGGTCCTGCAGATAGTGCGGCTGCCGCGCCTGCAGGGTGGTCAGCTCATGCGCGGCGTCGCTCT GATCGCCCCGGGAGCCTGAG
Downstream 100 bases:
>100_bases TCCGGCCGCGCAGGAACCAGGTGCTTCGGGCAGCCGGCCCGAAGCACCTGGTTGGCCTAACAGGTCCGCCGGGCCTGACG GGCCCGACGAGCCCGACGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MSDFPAMDPMDHPYLEPDLYRGAANNIPPMLAYDGGQVGTLTVRAGSVTAERHRPRRNDNESFTVWTDRDGSVCLLAVAG AVGDGENAGRAARMATALAVQASRRRLASTAPASGADLAALVRAVTGDIDAMLHSRASGPDYLTTLLLGFVPTVVAPGGS VPAVVGRVGGLMAWRIRAGTVDPVFSLADPGSPGTGGAPPQVAALPGHGDALEVRTVTLSDGEVLALTTGGLASGVRGER VTGFLGPLWTVPPTPLEFLASLAVRRNDRDDDRTAAVAWLGHHESRPGR
Sequences:
>Translated_289_residues MSDFPAMDPMDHPYLEPDLYRGAANNIPPMLAYDGGQVGTLTVRAGSVTAERHRPRRNDNESFTVWTDRDGSVCLLAVAG AVGDGENAGRAARMATALAVQASRRRLASTAPASGADLAALVRAVTGDIDAMLHSRASGPDYLTTLLLGFVPTVVAPGGS VPAVVGRVGGLMAWRIRAGTVDPVFSLADPGSPGTGGAPPQVAALPGHGDALEVRTVTLSDGEVLALTTGGLASGVRGER VTGFLGPLWTVPPTPLEFLASLAVRRNDRDDDRTAAVAWLGHHESRPGR >Mature_288_residues SDFPAMDPMDHPYLEPDLYRGAANNIPPMLAYDGGQVGTLTVRAGSVTAERHRPRRNDNESFTVWTDRDGSVCLLAVAGA VGDGENAGRAARMATALAVQASRRRLASTAPASGADLAALVRAVTGDIDAMLHSRASGPDYLTTLLLGFVPTVVAPGGSV PAVVGRVGGLMAWRIRAGTVDPVFSLADPGSPGTGGAPPQVAALPGHGDALEVRTVTLSDGEVLALTTGGLASGVRGERV TGFLGPLWTVPPTPLEFLASLAVRRNDRDDDRTAAVAWLGHHESRPGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29910; Mature: 29779
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFPAMDPMDHPYLEPDLYRGAANNIPPMLAYDGGQVGTLTVRAGSVTAERHRPRRNDN CCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCEEEEEEEECCEEHHHCCCCCCCC ESFTVWTDRDGSVCLLAVAGAVGDGENAGRAARMATALAVQASRRRLASTAPASGADLAA CCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LVRAVTGDIDAMLHSRASGPDYLTTLLLGFVPTVVAPGGSVPAVVGRVGGLMAWRIRAGT HHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEECCC VDPVFSLADPGSPGTGGAPPQVAALPGHGDALEVRTVTLSDGEVLALTTGGLASGVRGER CCCHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCE VTGFLGPLWTVPPTPLEFLASLAVRRNDRDDDRTAAVAWLGHHESRPGR EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC >Mature Secondary Structure SDFPAMDPMDHPYLEPDLYRGAANNIPPMLAYDGGQVGTLTVRAGSVTAERHRPRRNDN CCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCEEEEEEEECCEEHHHCCCCCCCC ESFTVWTDRDGSVCLLAVAGAVGDGENAGRAARMATALAVQASRRRLASTAPASGADLAA CCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LVRAVTGDIDAMLHSRASGPDYLTTLLLGFVPTVVAPGGSVPAVVGRVGGLMAWRIRAGT HHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEECCC VDPVFSLADPGSPGTGGAPPQVAALPGHGDALEVRTVTLSDGEVLALTTGGLASGVRGER CCCHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCE VTGFLGPLWTVPPTPLEFLASLAVRRNDRDDDRTAAVAWLGHHESRPGR EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA