| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318841
Identifier: 158318841
GI number: 158318841
Start: 8691466
End: 8692698
Strand: Direct
Name: 158318841
Synonym: Franean1_7122
Alternate gene names: NA
Gene position: 8691466-8692698 (Clockwise)
Preceding gene: 158318838
Following gene: 158318844
Centisome position: 96.76
GC content: 71.13
Gene sequence:
>1233_bases GTGCTGTTCGTCGGAGACGACTGGGCCGAAGACCATCACGACATCGAGATCCAGAACGAGGCGGGACAGCGTCTCGCTCG CGCTCGGCTTCCCGAGGGCGTCGCCGGCCTCGCCCGGTTCCACGCACTGATCGCCGACCACCTCGGCGGCGACGAGGATC CGTCACAGGTCGTGGTGGGAATCGAAACCGACCGGGGACCATGGGTCGGCGCCCTGGTCGCGACCGGCTACCAGGTCTAC GCAATCAACCCGCTCTCCGCCGCCCGGTACCGCGAACGGCACGTCACCTCCCGGGCGAAAAGCGACCCTGGAGACGCGAG AGTACTGGCGGACCTGGTCCGCACCGACCGGCATCACCACCGCACCGTCGCCGCGGACAGCGACCTCGCCGAAGCCGTGA AAGTCCTGGCCCGTACCCATCAGAACCTGGCCTGGGCACGGCAACGACACGCGAATCTGCTGCGTTCGACGCTGCGGGAG TTCCACCCGGCCGCCCTGGTCGCCTTTGACGACCTCGCGAGCCGTGACGCCCTCGCCGTCCTGGCCGCCGCCCCGACCCC GGCAGCCGGCCGCGCGCTGACCACGACACGGATCGCCGCCCTGCTCCGCAGGGCCGGCCGGCAACGCCGCGCCGACACCC GAGCAGAGGAGATCCGCAGCGCGCTGCGCGGAGAGCAGCTCACCGCACCCACCGAGATCGCGCAGGCATTCGGGCACACC GTCATCGCCGTCGTCGCGGTCCTGACGACCCTCGTCGCGCAGATCGACCGGGTCGAGGCCGAGATGACCACACGCCTCCA CCAGCATCCCCACGCCCGGATCTACCTGTCCCTGCCCGGATTCGGGCCGGTCCTGGCCGCACGGGCCCTCGGCGAGTTCG GCGACGACCCGAACCGATACGAGACCGCTCGTGCCCGCCGCAACTACGCCGGCACCTCACCGATCACCCGCGCCTCCGGC AAACGCCGTGTCGTCTTGGCCCGCGTCGCGGTTAACAGCCGCCTCCGCGACGCACTGGCAACCCAGGCATTCGCCGCGCT GAAAGCCTCACCCGGCGCGCGGGCCTACTACGACAGCCATCGCGCCCGCGGCATGACCCACCACCAGGCGCTACGCGCCC TCGCGAACCGACACGTCGCCATCCTCCACGGCTGCCTACGCCACCAGACGGCCTACGACGAAGCCACCGCCTGGCCAGCC CTCACCGACACCACCCAGACCGCCGCCGCTTGA
Upstream 100 bases:
>100_bases CTGGTGGGACGGCGTGCCAAGACGAGCACTGATCCATTAGCGCGTGCGTGAACCTTCCCGAGGTCCGTGTCCTACACCGG ACGAGGAAGGAGAGCACAGG
Downstream 100 bases:
>100_bases CAGATAGAACCAAGGGACGTCTACACCCGTTGCCACATAACGATCTCCAAACGACCGCCAGGAGATCATCGTGATGAGAA AGGGCCTGGTCAAAGGCGGT
Product: transposase IS111A/IS1328/IS1533
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MLFVGDDWAEDHHDIEIQNEAGQRLARARLPEGVAGLARFHALIADHLGGDEDPSQVVVGIETDRGPWVGALVATGYQVY AINPLSAARYRERHVTSRAKSDPGDARVLADLVRTDRHHHRTVAADSDLAEAVKVLARTHQNLAWARQRHANLLRSTLRE FHPAALVAFDDLASRDALAVLAAAPTPAAGRALTTTRIAALLRRAGRQRRADTRAEEIRSALRGEQLTAPTEIAQAFGHT VIAVVAVLTTLVAQIDRVEAEMTTRLHQHPHARIYLSLPGFGPVLAARALGEFGDDPNRYETARARRNYAGTSPITRASG KRRVVLARVAVNSRLRDALATQAFAALKASPGARAYYDSHRARGMTHHQALRALANRHVAILHGCLRHQTAYDEATAWPA LTDTTQTAAA
Sequences:
>Translated_410_residues MLFVGDDWAEDHHDIEIQNEAGQRLARARLPEGVAGLARFHALIADHLGGDEDPSQVVVGIETDRGPWVGALVATGYQVY AINPLSAARYRERHVTSRAKSDPGDARVLADLVRTDRHHHRTVAADSDLAEAVKVLARTHQNLAWARQRHANLLRSTLRE FHPAALVAFDDLASRDALAVLAAAPTPAAGRALTTTRIAALLRRAGRQRRADTRAEEIRSALRGEQLTAPTEIAQAFGHT VIAVVAVLTTLVAQIDRVEAEMTTRLHQHPHARIYLSLPGFGPVLAARALGEFGDDPNRYETARARRNYAGTSPITRASG KRRVVLARVAVNSRLRDALATQAFAALKASPGARAYYDSHRARGMTHHQALRALANRHVAILHGCLRHQTAYDEATAWPA LTDTTQTAAA >Mature_410_residues MLFVGDDWAEDHHDIEIQNEAGQRLARARLPEGVAGLARFHALIADHLGGDEDPSQVVVGIETDRGPWVGALVATGYQVY AINPLSAARYRERHVTSRAKSDPGDARVLADLVRTDRHHHRTVAADSDLAEAVKVLARTHQNLAWARQRHANLLRSTLRE FHPAALVAFDDLASRDALAVLAAAPTPAAGRALTTTRIAALLRRAGRQRRADTRAEEIRSALRGEQLTAPTEIAQAFGHT VIAVVAVLTTLVAQIDRVEAEMTTRLHQHPHARIYLSLPGFGPVLAARALGEFGDDPNRYETARARRNYAGTSPITRASG KRRVVLARVAVNSRLRDALATQAFAALKASPGARAYYDSHRARGMTHHQALRALANRHVAILHGCLRHQTAYDEATAWPA LTDTTQTAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 44665; Mature: 44665
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFVGDDWAEDHHDIEIQNEAGQRLARARLPEGVAGLARFHALIADHLGGDEDPSQVVVG CEEECCCCCCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE IETDRGPWVGALVATGYQVYAINPLSAARYRERHVTSRAKSDPGDARVLADLVRTDRHHH EECCCCCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHH RTVAADSDLAEAVKVLARTHQNLAWARQRHANLLRSTLREFHPAALVAFDDLASRDALAV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHCCCCHHEE LAAAPTPAAGRALTTTRIAALLRRAGRQRRADTRAEEIRSALRGEQLTAPTEIAQAFGHT EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VIAVVAVLTTLVAQIDRVEAEMTTRLHQHPHARIYLSLPGFGPVLAARALGEFGDDPNRY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCHH ETARARRNYAGTSPITRASGKRRVVLARVAVNSRLRDALATQAFAALKASPGARAYYDSH HHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RARGMTHHQALRALANRHVAILHGCLRHQTAYDEATAWPALTDTTQTAAA HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC >Mature Secondary Structure MLFVGDDWAEDHHDIEIQNEAGQRLARARLPEGVAGLARFHALIADHLGGDEDPSQVVVG CEEECCCCCCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE IETDRGPWVGALVATGYQVYAINPLSAARYRERHVTSRAKSDPGDARVLADLVRTDRHHH EECCCCCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHH RTVAADSDLAEAVKVLARTHQNLAWARQRHANLLRSTLREFHPAALVAFDDLASRDALAV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHCCCCHHEE LAAAPTPAAGRALTTTRIAALLRRAGRQRRADTRAEEIRSALRGEQLTAPTEIAQAFGHT EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VIAVVAVLTTLVAQIDRVEAEMTTRLHQHPHARIYLSLPGFGPVLAARALGEFGDDPNRY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCHH ETARARRNYAGTSPITRASGKRRVVLARVAVNSRLRDALATQAFAALKASPGARAYYDSH HHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RARGMTHHQALRALANRHVAILHGCLRHQTAYDEATAWPALTDTTQTAAA HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2575701; 12000953 [H]