Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

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The map label for this gene is rbsA1 [H]

Identifier: 158318753

GI number: 158318753

Start: 8567325

End: 8568152

Strand: Reverse

Name: rbsA1 [H]

Synonym: Franean1_7024

Alternate gene names: 158318753

Gene position: 8568152-8567325 (Counterclockwise)

Preceding gene: 158318754

Following gene: 158318752

Centisome position: 95.39

GC content: 63.04

Gene sequence:

>828_bases
ATGAGAGGCACTATGGATTACCTTGCGCCGCAAACCGTCGAGAGCGGGCGGAAAGACATTGTACTCGAAGCCCGTGGCCT
GGTGAAGCGATACGGACAGGTCACTTGCCTGGACGGCTGCGACTTTGATCTTCGCGCCGGCGAGGTGCTTGCCGTCATCG
GCGACAACGGGGCTGGCAAGTCCAGTCTGATCAAGGCGCTCTCCGGCGCTCTCGTCCCAGACGAGGGCCAGATCCTGGTC
GACGGTGACCCGGTCCGCTTTCATAACCCCACCGATGCCCGTCGGTATGGCATAGAGACCGTTTATCAGGATCTCGCGGT
CGCGCCCGCGTTAGACATCGCGACCAACATGTTCCTGGGCCGCGAAATCCGACGCAAAGGACCACTGGGCCGCTACCTGC
GGATCCTTGACAAGCCGGCGATGAAGCGCCAAGCCGAGCAGGAAATGAGCAAACTGAAAATTGGCCTCCGATCGATGACG
AGCCCGGTCGAGAACCTCTCCGGCGGTCAACGCCAAGGAGTCGCCGTCGCCCGAGCAGCGGCCTTCGCTCAGCGGTTGGT
CATTATGGACGAACCCACAGCTGCCTTGGGTGTCCGGGAAACCGGCCAAGTCCTCGACCTCATCCGGCGCATCCGGGACC
GCGGCCTGCCGGTCATCCTCATCAGCCACAACATGCCAAATGTCTTCGAAGTCGCGGACCGCATCCACATCCAGCGGCTG
GGGCGGCGGGCTGCCGTCGTACTACCGACGGAGTGCACCATGCCCGAGGTGGTAGCCATCATGACCGGCGCAACATCCAC
AGTGGGGCCCGCTCCTGCAGGAGCGTAG

Upstream 100 bases:

>100_bases
TGCAGCTCATCGGCACCAAATCCATCTACCAGGTGCTCATCACTGGCATTCTGGTCATCCTCGCCGTGGCCATTGACCAA
CTCGCTCGCAGGAGGAAAGC

Downstream 100 bases:

>100_bases
CCACGATCCCGTAAGAACTAGCCGTACACCTGCCGCGGCCAGTGTGGACAAAAACGGCCATCGCACCATGGCCGCATATC
CGAGCTATCCGAAGGAGGAC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MRGTMDYLAPQTVESGRKDIVLEARGLVKRYGQVTCLDGCDFDLRAGEVLAVIGDNGAGKSSLIKALSGALVPDEGQILV
DGDPVRFHNPTDARRYGIETVYQDLAVAPALDIATNMFLGREIRRKGPLGRYLRILDKPAMKRQAEQEMSKLKIGLRSMT
SPVENLSGGQRQGVAVARAAAFAQRLVIMDEPTAALGVRETGQVLDLIRRIRDRGLPVILISHNMPNVFEVADRIHIQRL
GRRAAVVLPTECTMPEVVAIMTGATSTVGPAPAGA

Sequences:

>Translated_275_residues
MRGTMDYLAPQTVESGRKDIVLEARGLVKRYGQVTCLDGCDFDLRAGEVLAVIGDNGAGKSSLIKALSGALVPDEGQILV
DGDPVRFHNPTDARRYGIETVYQDLAVAPALDIATNMFLGREIRRKGPLGRYLRILDKPAMKRQAEQEMSKLKIGLRSMT
SPVENLSGGQRQGVAVARAAAFAQRLVIMDEPTAALGVRETGQVLDLIRRIRDRGLPVILISHNMPNVFEVADRIHIQRL
GRRAAVVLPTECTMPEVVAIMTGATSTVGPAPAGA
>Mature_275_residues
MRGTMDYLAPQTVESGRKDIVLEARGLVKRYGQVTCLDGCDFDLRAGEVLAVIGDNGAGKSSLIKALSGALVPDEGQILV
DGDPVRFHNPTDARRYGIETVYQDLAVAPALDIATNMFLGREIRRKGPLGRYLRILDKPAMKRQAEQEMSKLKIGLRSMT
SPVENLSGGQRQGVAVARAAAFAQRLVIMDEPTAALGVRETGQVLDLIRRIRDRGLPVILISHNMPNVFEVADRIHIQRL
GRRAAVVLPTECTMPEVVAIMTGATSTVGPAPAGA

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=226, Percent_Identity=28.3185840707965, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI9665248, Length=215, Percent_Identity=32.093023255814, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=245, Percent_Identity=27.3469387755102, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI105990541, Length=207, Percent_Identity=27.0531400966184, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI42741659, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=26.0663507109005, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI255708477, Length=195, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI27881501, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI45446740, Length=206, Percent_Identity=23.7864077669903, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI150417984, Length=221, Percent_Identity=27.6018099547511, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI47078218, Length=206, Percent_Identity=23.7864077669903, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI48995001, Length=245, Percent_Identity=37.1428571428571, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=33.3333333333333, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1788472, Length=245, Percent_Identity=32.2448979591837, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788210, Length=221, Percent_Identity=33.0316742081448, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1789991, Length=246, Percent_Identity=32.1138211382114, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788897, Length=238, Percent_Identity=33.6134453781513, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790525, Length=239, Percent_Identity=28.8702928870293, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787792, Length=247, Percent_Identity=30.7692307692308, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786345, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=29.3859649122807, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=32.2429906542056, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=29.0748898678414, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787712, Length=234, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787758, Length=227, Percent_Identity=29.0748898678414, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789962, Length=222, Percent_Identity=31.0810810810811, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786398, Length=204, Percent_Identity=32.3529411764706, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=29.2237442922374, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=26.6094420600858, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=24.3027888446215, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081791, Length=235, Percent_Identity=28.0851063829787, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=27.1111111111111, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=31.0185185185185, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786872, Length=214, Percent_Identity=29.9065420560748, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789672, Length=212, Percent_Identity=27.3584905660377, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790534, Length=245, Percent_Identity=26.530612244898, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788506, Length=228, Percent_Identity=31.140350877193, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI145693107, Length=239, Percent_Identity=30.1255230125523, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786803, Length=235, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788165, Length=246, Percent_Identity=30.4878048780488, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994997, Length=228, Percent_Identity=27.1929824561404, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790162, Length=231, Percent_Identity=26.8398268398268, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=25.6880733944954, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=27.0042194092827, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI87081782, Length=245, Percent_Identity=26.1224489795918, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787547, Length=244, Percent_Identity=25.8196721311475, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994943, Length=237, Percent_Identity=27.8481012658228, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=26.4069264069264, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=29.3838862559242, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994883, Length=224, Percent_Identity=28.125, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=26.2626262626263, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788644, Length=211, Percent_Identity=27.0142180094787, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790544, Length=223, Percent_Identity=26.457399103139, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=29.4605809128631, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790739, Length=257, Percent_Identity=23.3463035019455, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=29.2237442922374, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082268, Length=220, Percent_Identity=22.2727272727273, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=28.2407407407407, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082064, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786253, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786319, Length=260, Percent_Identity=27.3076923076923, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788540, Length=210, Percent_Identity=30.4761904761905, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787759, Length=223, Percent_Identity=28.6995515695067, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=25.7510729613734, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787112, Length=191, Percent_Identity=29.3193717277487, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788450, Length=219, Percent_Identity=23.7442922374429, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=239, Percent_Identity=26.3598326359833, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=27.5555555555556, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=29.5964125560538, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=210, Percent_Identity=29.0476190476191, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=212, Percent_Identity=28.7735849056604, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=223, Percent_Identity=23.7668161434978, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=241, Percent_Identity=26.5560165975104, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71984940, Length=210, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=239, Percent_Identity=25.5230125523013, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=239, Percent_Identity=25.5230125523013, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=239, Percent_Identity=25.5230125523013, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=24.5454545454545, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17136592, Length=215, Percent_Identity=31.1627906976744, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI221512771, Length=226, Percent_Identity=23.8938053097345, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24643674, Length=224, Percent_Identity=23.2142857142857, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28574150, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007328, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17136662, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24659289, Length=217, Percent_Identity=30.4147465437788, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574259, Length=232, Percent_Identity=29.7413793103448, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85724858, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85724856, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580547, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580551, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580549, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580545, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85724864, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24580555, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI85816269, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580553, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 29705; Mature: 29705

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MRGTMDYLAPQTVESGRKDIVLEARGLVKRYGQVTCLDGCDFDLRAGEVLAVIGDNGAGK
CCCCHHHCCCHHHHCCCCEEEEHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCH
SSLIKALSGALVPDEGQILVDGDPVRFHNPTDARRYGIETVYQDLAVAPALDIATNMFLG
HHHHHHHHCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REIRRKGPLGRYLRILDKPAMKRQAEQEMSKLKIGLRSMTSPVENLSGGQRQGVAVARAA
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHH
AFAQRLVIMDEPTAALGVRETGQVLDLIRRIRDRGLPVILISHNMPNVFEVADRIHIQRL
HHHHHEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
GRRAAVVLPTECTMPEVVAIMTGATSTVGPAPAGA
CCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRGTMDYLAPQTVESGRKDIVLEARGLVKRYGQVTCLDGCDFDLRAGEVLAVIGDNGAGK
CCCCHHHCCCHHHHCCCCEEEEHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCH
SSLIKALSGALVPDEGQILVDGDPVRFHNPTDARRYGIETVYQDLAVAPALDIATNMFLG
HHHHHHHHCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REIRRKGPLGRYLRILDKPAMKRQAEQEMSKLKIGLRSMTSPVENLSGGQRQGVAVARAA
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHH
AFAQRLVIMDEPTAALGVRETGQVLDLIRRIRDRGLPVILISHNMPNVFEVADRIHIQRL
HHHHHEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
GRRAAVVLPTECTMPEVVAIMTGATSTVGPAPAGA
CCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA