| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318596
Identifier: 158318596
GI number: 158318596
Start: 8367903
End: 8369504
Strand: Direct
Name: 158318596
Synonym: Franean1_6864
Alternate gene names: NA
Gene position: 8367903-8369504 (Clockwise)
Preceding gene: 158318593
Following gene: 158318614
Centisome position: 93.16
GC content: 72.6
Gene sequence:
>1602_bases GTGGACGTGCCCGGGTCTTCGGGCCCGCTCCCGTCCGCTGCCGGGACGGACGGGCCCGCCGGGAGCGGTGCGGGCGAGGA CGTGATCGCGCGGACGCTGCCGTACGAGCGCCTCGGCACGCCGGGCTCGCCGATGCGGCCGGACAAGACTCTCCTCAGCT CCGTGGCTCGGACCAGTGCCACCAGCCAGAGCAGCCCCGCCAACTCGGGCAGCTCAACCAGCACGGACAGCCCCACCCAT TCGGACAGCCCTTTCCGCCAGCGGGCCTCTGCCGGCCTGGGCAGCCCCGTGAGCAAGGGCGGGGGCCCGGTTGGGAGCAC CAGCGAGAACCCCGTCCCGGACGGGCCAGGGCCCGGAGCCAGGCCCGAAGCCGAAGCCGGAGCCGAAGCCGCGGACCCGG ACGAAGCTGCCCAGGCGCCAGGGGCCGGAGGCCAGGGGAAGGACAGCCGCCGCGGCGGGAATCACCGCGGCGGGACGGCT CGTCGAGGTAGGCCGCGCCGACGACGTCGCACCGTGCTCGGGGTCGCCGCCGCCGCGATGGTCATCCTGCTCGGCGCGAT CGGCCTGGTGACGCTCACCGGCGGCCCGGATTCGCGGCGTTCGGCCGATGCCCCGGCGGCGAGTCAGGCCCCGGATACGG CGAAGGCGCCCGGGGCGCAGCCCGCGCAGCCGGAGCCGGCACCGACCGGGCCGGCCGCGCCGGGGGTGCGGTGGCCCTCC GGGGCGAACGGGAACCCGCCACTGGACATCCGCGCCTGGGAGGCGTGGACGGGGCGGCTGACGAACGTCGCGGTCGTCTT CACGAAACGTAATGACTGGAACCAGATCGCCTACGACAACTGGCCGATGTCGGACTACCCGCCGGGGGTGTACAACGGGC AGCTTTCCATCGCCCAGCCGCTGTTCCCGCGGTCGGGTGACGAGCGGACCTGCGCCCGGGGTCACTATGACGCCTACTGG GCGGCGTTCGGCCAGACCCTGACGCGTAACGGCCGGCCCGACGCCATCGTCCGGCTCGGCTGGGAGTTCAACGGGAACTG GTTCTGGTGGTATCCGCGGGACACCGCGACCTGGAAGACCTGTTTCCAGCGGGCGGTCACCCAGATCCGGTCGACGGCGC CGGCGGTGCGGATCGACTTCAACGTCAGCGCGCACCGTGACCGGATGCCGAACGGTGACGACGTGTGGGCGGCCTACCCG GGCGACGAGTTCGTGAGCATCGTCAGCAGTGACGCCTACGACTCCTACCCGCCGTCGCGCTCCGCGGAGACCTTCGACCA GCAGTGCAACATTCCGTCGGGGGCGTGCACCGTGGCCGCGTTCGCGCGGGCGCACGGCAAGCAGTTCGCGGTGCCGGAGT GGGGGCTCGTCCGGGTGGACGGGAACGGCGGCGGCGACAATCCGCTCTTCATCGAGAAGATGCACGACCTGTTCGACCGG AACCGGGACATCCTCGCCTACGAGGCGTATTTCAGCACCGCCGAGGCGGACAACGTGCGTTCCTCGCTGATCAACCCGCC GCTGAACCCGATGGCCGCGCAGCGGTACCTGGAGCTGTTCGGTGCCGGGGCCGGCGGCAGTGGCAGCCCCGGCGGCCTGT GA
Upstream 100 bases:
>100_bases GGACACCGCCACCGAGGTCCCCGGCAACGCGTCCGGAGCGGGCACCGACCCGGTGCCGAAGACCGGCGAAGGTCCCGGCG GCGCTGGTGGAGGTGTAGGC
Downstream 100 bases:
>100_bases CCCGGGTGGTGACCGGTCCGGCCGTGATCTGAACGGCGGCCCGGTCCGGCCGTGACCCGGGCCGTGACCCGGGCCGGCTC GAGGAGCGTGGTGGCTGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosidase; Beta-Mannanase; FHA Domain-Containing Protein
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MDVPGSSGPLPSAAGTDGPAGSGAGEDVIARTLPYERLGTPGSPMRPDKTLLSSVARTSATSQSSPANSGSSTSTDSPTH SDSPFRQRASAGLGSPVSKGGGPVGSTSENPVPDGPGPGARPEAEAGAEAADPDEAAQAPGAGGQGKDSRRGGNHRGGTA RRGRPRRRRRTVLGVAAAAMVILLGAIGLVTLTGGPDSRRSADAPAASQAPDTAKAPGAQPAQPEPAPTGPAAPGVRWPS GANGNPPLDIRAWEAWTGRLTNVAVVFTKRNDWNQIAYDNWPMSDYPPGVYNGQLSIAQPLFPRSGDERTCARGHYDAYW AAFGQTLTRNGRPDAIVRLGWEFNGNWFWWYPRDTATWKTCFQRAVTQIRSTAPAVRIDFNVSAHRDRMPNGDDVWAAYP GDEFVSIVSSDAYDSYPPSRSAETFDQQCNIPSGACTVAAFARAHGKQFAVPEWGLVRVDGNGGGDNPLFIEKMHDLFDR NRDILAYEAYFSTAEADNVRSSLINPPLNPMAAQRYLELFGAGAGGSGSPGGL
Sequences:
>Translated_533_residues MDVPGSSGPLPSAAGTDGPAGSGAGEDVIARTLPYERLGTPGSPMRPDKTLLSSVARTSATSQSSPANSGSSTSTDSPTH SDSPFRQRASAGLGSPVSKGGGPVGSTSENPVPDGPGPGARPEAEAGAEAADPDEAAQAPGAGGQGKDSRRGGNHRGGTA RRGRPRRRRRTVLGVAAAAMVILLGAIGLVTLTGGPDSRRSADAPAASQAPDTAKAPGAQPAQPEPAPTGPAAPGVRWPS GANGNPPLDIRAWEAWTGRLTNVAVVFTKRNDWNQIAYDNWPMSDYPPGVYNGQLSIAQPLFPRSGDERTCARGHYDAYW AAFGQTLTRNGRPDAIVRLGWEFNGNWFWWYPRDTATWKTCFQRAVTQIRSTAPAVRIDFNVSAHRDRMPNGDDVWAAYP GDEFVSIVSSDAYDSYPPSRSAETFDQQCNIPSGACTVAAFARAHGKQFAVPEWGLVRVDGNGGGDNPLFIEKMHDLFDR NRDILAYEAYFSTAEADNVRSSLINPPLNPMAAQRYLELFGAGAGGSGSPGGL >Mature_533_residues MDVPGSSGPLPSAAGTDGPAGSGAGEDVIARTLPYERLGTPGSPMRPDKTLLSSVARTSATSQSSPANSGSSTSTDSPTH SDSPFRQRASAGLGSPVSKGGGPVGSTSENPVPDGPGPGARPEAEAGAEAADPDEAAQAPGAGGQGKDSRRGGNHRGGTA RRGRPRRRRRTVLGVAAAAMVILLGAIGLVTLTGGPDSRRSADAPAASQAPDTAKAPGAQPAQPEPAPTGPAAPGVRWPS GANGNPPLDIRAWEAWTGRLTNVAVVFTKRNDWNQIAYDNWPMSDYPPGVYNGQLSIAQPLFPRSGDERTCARGHYDAYW AAFGQTLTRNGRPDAIVRLGWEFNGNWFWWYPRDTATWKTCFQRAVTQIRSTAPAVRIDFNVSAHRDRMPNGDDVWAAYP GDEFVSIVSSDAYDSYPPSRSAETFDQQCNIPSGACTVAAFARAHGKQFAVPEWGLVRVDGNGGGDNPLFIEKMHDLFDR NRDILAYEAYFSTAEADNVRSSLINPPLNPMAAQRYLELFGAGAGGSGSPGGL
Specific function: Unknown
COG id: COG4124
COG function: function code G; Beta-mannanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55922; Mature: 55922
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVPGSSGPLPSAAGTDGPAGSGAGEDVIARTLPYERLGTPGSPMRPDKTLLSSVARTSA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHC TSQSSPANSGSSTSTDSPTHSDSPFRQRASAGLGSPVSKGGGPVGSTSENPVPDGPGPGA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC RPEAEAGAEAADPDEAAQAPGAGGQGKDSRRGGNHRGGTARRGRPRRRRRTVLGVAAAAM CCCHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VILLGAIGLVTLTGGPDSRRSADAPAASQAPDTAKAPGAQPAQPEPAPTGPAAPGVRWPS HHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GANGNPPLDIRAWEAWTGRLTNVAVVFTKRNDWNQIAYDNWPMSDYPPGVYNGQLSIAQP CCCCCCCCEEEECHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCC LFPRSGDERTCARGHYDAYWAAFGQTLTRNGRPDAIVRLGWEFNGNWFWWYPRDTATWKT CCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEECCCCHHHHH CFQRAVTQIRSTAPAVRIDFNVSAHRDRMPNGDDVWAAYPGDEFVSIVSSDAYDSYPPSR HHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCC SAETFDQQCNIPSGACTVAAFARAHGKQFAVPEWGLVRVDGNGGGDNPLFIEKMHDLFDR CHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHC NRDILAYEAYFSTAEADNVRSSLINPPLNPMAAQRYLELFGAGAGGSGSPGGL CCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MDVPGSSGPLPSAAGTDGPAGSGAGEDVIARTLPYERLGTPGSPMRPDKTLLSSVARTSA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHC TSQSSPANSGSSTSTDSPTHSDSPFRQRASAGLGSPVSKGGGPVGSTSENPVPDGPGPGA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC RPEAEAGAEAADPDEAAQAPGAGGQGKDSRRGGNHRGGTARRGRPRRRRRTVLGVAAAAM CCCHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH VILLGAIGLVTLTGGPDSRRSADAPAASQAPDTAKAPGAQPAQPEPAPTGPAAPGVRWPS HHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GANGNPPLDIRAWEAWTGRLTNVAVVFTKRNDWNQIAYDNWPMSDYPPGVYNGQLSIAQP CCCCCCCCEEEECHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCC LFPRSGDERTCARGHYDAYWAAFGQTLTRNGRPDAIVRLGWEFNGNWFWWYPRDTATWKT CCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEECCCCHHHHH CFQRAVTQIRSTAPAVRIDFNVSAHRDRMPNGDDVWAAYPGDEFVSIVSSDAYDSYPPSR HHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCC SAETFDQQCNIPSGACTVAAFARAHGKQFAVPEWGLVRVDGNGGGDNPLFIEKMHDLFDR CHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHC NRDILAYEAYFSTAEADNVRSSLINPPLNPMAAQRYLELFGAGAGGSGSPGGL CCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA