BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is yxbG [H]

Identifier: 158318563

GI number: 158318563

Start: 8325587

End: 8326420

Strand: Reverse

Name: yxbG [H]

Synonym: Franean1_6831

Alternate gene names: 158318563

Gene position: 8326420-8325587 (Counterclockwise)

Preceding gene: 158318564

Following gene: 158318562

Centisome position: 92.7

GC content: 69.78

Gene sequence:

>834_bases
ATGGCACGAAGTTCTGGACGGGTCGAGGGAAAGGTCGCCATCGTCACCGGAGCCGGCTCCACGCCGGGCGACGGGATAGG
CACCGGCAAGGCCAGCGCAGTGGTGCTCGCCCGGGAGGGCGCGAGCGTCCTGCTCGTCGACCTGTACCCCGAACGCGCCG
AGCTGACCTTAAAGATGATTGAGGAGGAGGGCGGCAAGGCGAAGGTGTTCGCCGCCGACGTCACCCAGGCGGCCCAGTGC
GAGGCGATGGTCGCGGCGGCCGTCGAGAACTTCGGCACGGTCGACATCCTCGTCAACAACATCGGGCTGGCCTCGCTGGG
CACCGTCGTGGACCTCTCGGAGGAGGCCTGGGACCGCGCCCTCGACGTCAACCTGCGCACGGTCTTCCTGGCGTCGAAGT
ACGCCGTGCCGGTGATGGCCGCGCAGGGCTCCGGCTCGATCGTCAACATCTCGTCGATCTCCGCGCTGCGCGGCGACGGC
ACGATCGCCTACTCGGCGGCCAAGGGCGCGATGCTTGCCATGACCGTCGACATGGCCTACTCGCACGGCCGGCAGGGCAT
CCGGGTCAACGCGATCGCCCCCGGGCACATCACCACCCCGATGGTGAACTCCGTGTCGGGGCAGGACCCGCGGGCCGACT
TCCGCACGAAGCTGCGCAACGAGGCCGGCCTGCTCGGCACCCCGGGCACCGGCTGGGACGTCGGCTGGGCCGCGGCCTTC
CTCGCCTCCGACGAGGCACGCTGGATCACCGGCATCACCATGCCGGTGGACTCCGGAGTCCTCAGCATCACGCCGCTGTC
GATGGCGCAGTACCTGCGCGCCATCCCGGATTGA

Upstream 100 bases:

>100_bases
GGTGGTCGGCGCGGAGGTCGCCGCGGTGACCAACGTCGGCGGATACGAGGCGGGCGCGGCCCTTCTGACGCGCTGGCATG
GCTGAGAGAGGAGACGTCGG

Downstream 100 bases:

>100_bases
CATCCTCTCCGCCCTGAAAACCGGAGCACTGGCCCGCGGCTTGGTAGCAGTCGCTTCGCGACGGGGGCTGACCGCCCCCG
GTTCGCCCGCCGGGACGGAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MARSSGRVEGKVAIVTGAGSTPGDGIGTGKASAVVLAREGASVLLVDLYPERAELTLKMIEEEGGKAKVFAADVTQAAQC
EAMVAAAVENFGTVDILVNNIGLASLGTVVDLSEEAWDRALDVNLRTVFLASKYAVPVMAAQGSGSIVNISSISALRGDG
TIAYSAAKGAMLAMTVDMAYSHGRQGIRVNAIAPGHITTPMVNSVSGQDPRADFRTKLRNEAGLLGTPGTGWDVGWAAAF
LASDEARWITGITMPVDSGVLSITPLSMAQYLRAIPD

Sequences:

>Translated_277_residues
MARSSGRVEGKVAIVTGAGSTPGDGIGTGKASAVVLAREGASVLLVDLYPERAELTLKMIEEEGGKAKVFAADVTQAAQC
EAMVAAAVENFGTVDILVNNIGLASLGTVVDLSEEAWDRALDVNLRTVFLASKYAVPVMAAQGSGSIVNISSISALRGDG
TIAYSAAKGAMLAMTVDMAYSHGRQGIRVNAIAPGHITTPMVNSVSGQDPRADFRTKLRNEAGLLGTPGTGWDVGWAAAF
LASDEARWITGITMPVDSGVLSITPLSMAQYLRAIPD
>Mature_276_residues
ARSSGRVEGKVAIVTGAGSTPGDGIGTGKASAVVLAREGASVLLVDLYPERAELTLKMIEEEGGKAKVFAADVTQAAQCE
AMVAAAVENFGTVDILVNNIGLASLGTVVDLSEEAWDRALDVNLRTVFLASKYAVPVMAAQGSGSIVNISSISALRGDGT
IAYSAAKGAMLAMTVDMAYSHGRQGIRVNAIAPGHITTPMVNSVSGQDPRADFRTKLRNEAGLLGTPGTGWDVGWAAAFL
ASDEARWITGITMPVDSGVLSITPLSMAQYLRAIPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=33.9622641509434, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI66933014, Length=262, Percent_Identity=32.824427480916, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=33.7254901960784, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=33.7777777777778, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI4758504, Length=219, Percent_Identity=36.0730593607306, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI40254992, Length=235, Percent_Identity=30.2127659574468, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=29.5275590551181, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=30.6201550387597, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4504505, Length=198, Percent_Identity=32.8282828282828, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=33.5135135135135, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=32.9365079365079, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=32.3232323232323, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI40807363, Length=215, Percent_Identity=27.4418604651163, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI31542939, Length=216, Percent_Identity=30.0925925925926, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI40254986, Length=209, Percent_Identity=32.0574162679426, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI19923817, Length=278, Percent_Identity=25.8992805755396, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI10190704, Length=270, Percent_Identity=28.5185185185185, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4503301, Length=202, Percent_Identity=30.1980198019802, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI83715985, Length=220, Percent_Identity=33.6363636363636, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310128830, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI310115468, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=37.037037037037, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI209862901, Length=205, Percent_Identity=25.8536585365854, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI19923983, Length=205, Percent_Identity=25.8536585365854, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI20149619, Length=220, Percent_Identity=30, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI224922801, Length=155, Percent_Identity=32.9032258064516, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=35.9848484848485, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=35.9073359073359, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=30.8300395256917, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=34.375, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789208, Length=264, Percent_Identity=32.1969696969697, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787905, Length=254, Percent_Identity=33.0708661417323, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=34.2629482071713, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788459, Length=259, Percent_Identity=29.3436293436293, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=29.8039215686275, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789057, Length=264, Percent_Identity=30.6818181818182, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787526, Length=260, Percent_Identity=28.4615384615385, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367365, Length=202, Percent_Identity=30.1980198019802, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=265, Percent_Identity=31.3207547169811, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=34.3173431734317, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=31.7647058823529, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=31.496062992126, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=31.496062992126, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=30.7407407407407, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=260, Percent_Identity=31.5384615384615, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=29.2490118577075, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=30.1115241635688, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=274, Percent_Identity=30.6569343065693, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17564282, Length=210, Percent_Identity=29.5238095238095, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17568967, Length=249, Percent_Identity=30.9236947791165, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=32.1033210332103, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=30.8550185873606, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=284, Percent_Identity=26.7605633802817, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=31.2267657992565, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=29.4117647058824, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=208, Percent_Identity=31.7307692307692, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=30.2238805970149, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=31.5589353612167, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=28, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=28.4090909090909, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=276, Percent_Identity=30.0724637681159, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=263, Percent_Identity=32.319391634981, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=208, Percent_Identity=31.25, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=28.6792452830189, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=30.8550185873606, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=30.6930693069307, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=284, Percent_Identity=29.2253521126761, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=208, Percent_Identity=25.9615384615385, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17555612, Length=256, Percent_Identity=28.90625, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=207, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=26.6331658291457, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71997099, Length=215, Percent_Identity=29.3023255813954, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=201, Percent_Identity=28.3582089552239, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=264, Percent_Identity=30.6818181818182, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI86565303, Length=218, Percent_Identity=28.4403669724771, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=27.8625954198473, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=30.9278350515464, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=206, Percent_Identity=31.5533980582524, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=28.0769230769231, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=35.5212355212355, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=35.5212355212355, Blast_Score=130, Evalue=9e-31,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=35.3846153846154, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24644339, Length=264, Percent_Identity=31.8181818181818, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=33.7164750957854, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.6772908366534, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24644337, Length=237, Percent_Identity=31.2236286919831, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI18859837, Length=206, Percent_Identity=32.5242718446602, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI17737361, Length=208, Percent_Identity=32.2115384615385, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=30.4545454545455, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=195, Percent_Identity=32.8205128205128, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24640492, Length=212, Percent_Identity=25.9433962264151, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=223, Percent_Identity=25.1121076233184, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=150, Percent_Identity=30.6666666666667, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581726, Length=215, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584752, Length=240, Percent_Identity=30, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649181, Length=203, Percent_Identity=29.5566502463054, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076933, Length=207, Percent_Identity=32.8502415458937, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24584748, Length=207, Percent_Identity=32.8502415458937, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28596; Mature: 28465

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSSGRVEGKVAIVTGAGSTPGDGIGTGKASAVVLAREGASVLLVDLYPERAELTLKMI
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHEEEEEE
EEEGGKAKVFAADVTQAAQCEAMVAAAVENFGTVDILVNNIGLASLGTVVDLSEEAWDRA
CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCEEECCHHHHHHH
LDVNLRTVFLASKYAVPVMAAQGSGSIVNISSISALRGDGTIAYSAAKGAMLAMTVDMAY
CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCEEECCCCEEEEECCCCEEEEEEEEHHH
SHGRQGIRVNAIAPGHITTPMVNSVSGQDPRADFRTKLRNEAGLLGTPGTGWDVGWAAAF
HCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHH
LASDEARWITGITMPVDSGVLSITPLSMAQYLRAIPD
HCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHCCC
>Mature Secondary Structure 
ARSSGRVEGKVAIVTGAGSTPGDGIGTGKASAVVLAREGASVLLVDLYPERAELTLKMI
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHEEEEEE
EEEGGKAKVFAADVTQAAQCEAMVAAAVENFGTVDILVNNIGLASLGTVVDLSEEAWDRA
CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCEEECCHHHHHHH
LDVNLRTVFLASKYAVPVMAAQGSGSIVNISSISALRGDGTIAYSAAKGAMLAMTVDMAY
CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCEEECCCCEEEEECCCCEEEEEEEEHHH
SHGRQGIRVNAIAPGHITTPMVNSVSGQDPRADFRTKLRNEAGLLGTPGTGWDVGWAAAF
HCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHH
LASDEARWITGITMPVDSGVLSITPLSMAQYLRAIPD
HCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]