| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is fadD11 [H]
Identifier: 158318552
GI number: 158318552
Start: 8308341
End: 8310302
Strand: Reverse
Name: fadD11 [H]
Synonym: Franean1_6820
Alternate gene names: 158318552
Gene position: 8310302-8308341 (Counterclockwise)
Preceding gene: 158318555
Following gene: 158318551
Centisome position: 92.52
GC content: 73.09
Gene sequence:
>1962_bases ATGGCGGCTGACACGACGACATCCTTCGAGGTGGTCGGCTCGGCCGACGAGGCGGCGGACATCCGGGCCGCGGTCGCCGG CCTGACCGTCCCCATGCTGTTGGCCCGCCAGTGCCGCTCCCGCCCGGACGCGGTGAGCATCCACTGGATGCGCGACGGCG AGTGGCAGGCGTGGACGTGGCGCCAGTACGGCGCGCAGGTCGCGCGGATGGCCGGCGCGCTGGAGCGTCTCGGGTTCGGC CGCGGTGACCGGGCGCTGCTGATGACGTGCCCGCGGCCGGAGTTCCACGTCATCGACTCCGCCGTGCTCCTGCTTGGCGG CTGCCCGATCTCGATCTACAACTCGTCGCCGGCGGAGCGGGTGCGTTACCTCGCCGCGCACTGCCGGGCCAGCCTCGTCG TCGTCGAGGGACGCGAGCTGCTTGCCCGGGTGCTGGCCGTGCGCGCCGAGCTGCCCGACCTGCGGCACGTCGTCGTCATC GACCCGGCTCCCACCGGCAGCGGCGGTACCGGCAGTGAGGCCGCCGGCGGCGAGAACCTCGGCGGCGGGGCCGCCGGTGA CGTGCCGCCGGGTGTGCTCCGCTGGGACGACCTGCTCGCGGCCGACCCGGTCGACCTCGAGGCGCGGGCCGCGACCGCCG GCCCCGACGACCCGTGCACCGTGATCTACACCTCGGGGACGACCGGCGTCCCGAAGGGCGTCATGCTGGATCACAGGGCG GTGATCTGGCAGTGCGAGAGCTATCTGCGCCGGCTCGACCGTGACCTGACCGGTGCCCGCTGGGTCAGCTACCTACCGGT GGCACACATCGCGACCCGGTTCTACGCGCAGTACTTCCACGTCTACGCGGGCCTGGAGGACATCACCTGCCCGAACCCGG CGGACGTCGAATCGGTGCTGATCGACCGGCCGCCGCACCTCTTCTTCGCGCCGCCGCGGCTGTGGGAGAAATACCTGATC TCCCTGCGGGAGTGGATCGGCGCCATGGACGACCCGGCCCGCGCGACGCGGCTCACCCGCGCCATGCGAGTCGGCGAGGA GGCGGCGCTGCTCGAGCTCACCGGCGGGGACGTGCCACCCCGGCTCGCCCGGGAACGGGAGGAGCTGCGGCCCGCCACCC GGGAGCTGCGCACCCGCCTCGGGCTCGGCAACCTGCTGACCGGGGCGATCGGGGCCGCGCCCGCGAACCCCCAGCTCACC GCGGCGTGGATCGGCCTCGGCGTGCCGATGTTCGAGGGCTACGGGCTGAGCGAGTCGACCGGCATGCTCACGGTCGACCC GTTCGCCTACCGCCTCGGCAGCGTCGGCCGCCCGATGCCCGGCGTCGAGCTGCGCGTCGCGCCGGACGGCGAGCTGCACT TCCGCGCCGGCAGCGCGTTCCGGAGCTACCTGGACGACCCCGAGCAGACCACCGCCGCCATCGATGCGGAGGGCTGGGTG CGCACCGGTGACCTGGCCACCATCGACGACGGCTACGTCCGGCTGCGGGGACGTAAGAAGGAGCTCATCATCACCGCCGG AGGCGAGAACGTCTCACCTGTGGCGGTCGAGTTCGCGCTCGCGGCGCAGCTGCTGGTGGGGCAGGTGTGCGTGCTCGGCG ACGGCCAGCCGGCGCTGGGTGCTCTCGTCGTCCTGGACCCCCAGGCCGCCGCGGTCTGGGCCGGCGTGAACGGGATCCCG TTCACGCACGTCGACGAGCTCGCGGCCGATCCGCGGGTGCTGGCCGAGGTCGGGCGGCAGATCGCCCGGGCCAACGACCT GCTCGTGCGCCAGGAGAAGGTCCGGCGGTTTCACGTGCTGCGCCACGAGTGGCCGCTCGACTCCGACGAGCTCACGCCCA CCGCGAAACTCCGCCGCGATCAGATCGCGGCGAAATACCAGGCCGAGATCGCGGCGATGTTCGCGGCGCCCGCCAATGTC GAGATCATGCCGCGTGCGGTGGCCGCGAACCATTCCTCGTGA
Upstream 100 bases:
>100_bases GGTCGCCGGCGGCGGCGCGAACAATGGTCGGCCGAACGGCGACCTGACGATGTCACCGGGGCCATGAGCAAGGGTGCATA CCGAGGGGAGCGGGTGCCAC
Downstream 100 bases:
>100_bases TTCTCGGGGCATCCGCTGGCTTTCCCCACCTGGCCGCTGACCGCCGGCCCGCCCGCCTCGAAGGGCCGGAAGTACACGGT GAACGAGACTCCCGCCAGGC
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Acyl-CoA synthetase [H]
Number of amino acids: Translated: 653; Mature: 652
Protein sequence:
>653_residues MAADTTTSFEVVGSADEAADIRAAVAGLTVPMLLARQCRSRPDAVSIHWMRDGEWQAWTWRQYGAQVARMAGALERLGFG RGDRALLMTCPRPEFHVIDSAVLLLGGCPISIYNSSPAERVRYLAAHCRASLVVVEGRELLARVLAVRAELPDLRHVVVI DPAPTGSGGTGSEAAGGENLGGGAAGDVPPGVLRWDDLLAADPVDLEARAATAGPDDPCTVIYTSGTTGVPKGVMLDHRA VIWQCESYLRRLDRDLTGARWVSYLPVAHIATRFYAQYFHVYAGLEDITCPNPADVESVLIDRPPHLFFAPPRLWEKYLI SLREWIGAMDDPARATRLTRAMRVGEEAALLELTGGDVPPRLAREREELRPATRELRTRLGLGNLLTGAIGAAPANPQLT AAWIGLGVPMFEGYGLSESTGMLTVDPFAYRLGSVGRPMPGVELRVAPDGELHFRAGSAFRSYLDDPEQTTAAIDAEGWV RTGDLATIDDGYVRLRGRKKELIITAGGENVSPVAVEFALAAQLLVGQVCVLGDGQPALGALVVLDPQAAAVWAGVNGIP FTHVDELAADPRVLAEVGRQIARANDLLVRQEKVRRFHVLRHEWPLDSDELTPTAKLRRDQIAAKYQAEIAAMFAAPANV EIMPRAVAANHSS
Sequences:
>Translated_653_residues MAADTTTSFEVVGSADEAADIRAAVAGLTVPMLLARQCRSRPDAVSIHWMRDGEWQAWTWRQYGAQVARMAGALERLGFG RGDRALLMTCPRPEFHVIDSAVLLLGGCPISIYNSSPAERVRYLAAHCRASLVVVEGRELLARVLAVRAELPDLRHVVVI DPAPTGSGGTGSEAAGGENLGGGAAGDVPPGVLRWDDLLAADPVDLEARAATAGPDDPCTVIYTSGTTGVPKGVMLDHRA VIWQCESYLRRLDRDLTGARWVSYLPVAHIATRFYAQYFHVYAGLEDITCPNPADVESVLIDRPPHLFFAPPRLWEKYLI SLREWIGAMDDPARATRLTRAMRVGEEAALLELTGGDVPPRLAREREELRPATRELRTRLGLGNLLTGAIGAAPANPQLT AAWIGLGVPMFEGYGLSESTGMLTVDPFAYRLGSVGRPMPGVELRVAPDGELHFRAGSAFRSYLDDPEQTTAAIDAEGWV RTGDLATIDDGYVRLRGRKKELIITAGGENVSPVAVEFALAAQLLVGQVCVLGDGQPALGALVVLDPQAAAVWAGVNGIP FTHVDELAADPRVLAEVGRQIARANDLLVRQEKVRRFHVLRHEWPLDSDELTPTAKLRRDQIAAKYQAEIAAMFAAPANV EIMPRAVAANHSS >Mature_652_residues AADTTTSFEVVGSADEAADIRAAVAGLTVPMLLARQCRSRPDAVSIHWMRDGEWQAWTWRQYGAQVARMAGALERLGFGR GDRALLMTCPRPEFHVIDSAVLLLGGCPISIYNSSPAERVRYLAAHCRASLVVVEGRELLARVLAVRAELPDLRHVVVID PAPTGSGGTGSEAAGGENLGGGAAGDVPPGVLRWDDLLAADPVDLEARAATAGPDDPCTVIYTSGTTGVPKGVMLDHRAV IWQCESYLRRLDRDLTGARWVSYLPVAHIATRFYAQYFHVYAGLEDITCPNPADVESVLIDRPPHLFFAPPRLWEKYLIS LREWIGAMDDPARATRLTRAMRVGEEAALLELTGGDVPPRLAREREELRPATRELRTRLGLGNLLTGAIGAAPANPQLTA AWIGLGVPMFEGYGLSESTGMLTVDPFAYRLGSVGRPMPGVELRVAPDGELHFRAGSAFRSYLDDPEQTTAAIDAEGWVR TGDLATIDDGYVRLRGRKKELIITAGGENVSPVAVEFALAAQLLVGQVCVLGDGQPALGALVVLDPQAAAVWAGVNGIPF THVDELAADPRVLAEVGRQIARANDLLVRQEKVRRFHVLRHEWPLDSDELTPTAKLRRDQIAAKYQAEIAAMFAAPANVE IMPRAVAANHSS
Specific function: Unknown
COG id: COG1022
COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI27477105, Length=627, Percent_Identity=28.3891547049442, Blast_Score=229, Evalue=8e-60, Organism=Homo sapiens, GI83745141, Length=622, Percent_Identity=25.5627009646302, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI57165410, Length=573, Percent_Identity=25.130890052356, Blast_Score=142, Evalue=8e-34, Organism=Homo sapiens, GI57165412, Length=568, Percent_Identity=24.8239436619718, Blast_Score=139, Evalue=8e-33, Organism=Homo sapiens, GI40807491, Length=614, Percent_Identity=24.9185667752443, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI42794756, Length=609, Percent_Identity=22.6600985221675, Blast_Score=113, Evalue=6e-25, Organism=Homo sapiens, GI42794760, Length=609, Percent_Identity=22.6600985221675, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI42794758, Length=609, Percent_Identity=22.6600985221675, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI4758332, Length=647, Percent_Identity=21.483771251932, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI12669909, Length=647, Percent_Identity=21.483771251932, Blast_Score=112, Evalue=2e-24, Organism=Homo sapiens, GI42794754, Length=622, Percent_Identity=21.3826366559486, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI42794752, Length=622, Percent_Identity=21.3826366559486, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI187761345, Length=515, Percent_Identity=24.0776699029126, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI187761343, Length=515, Percent_Identity=24.0776699029126, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI156151445, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI145693145, Length=360, Percent_Identity=27.5, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1788107, Length=339, Percent_Identity=24.7787610619469, Blast_Score=86, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17556552, Length=571, Percent_Identity=25.2189141856392, Blast_Score=139, Evalue=6e-33, Organism=Caenorhabditis elegans, GI193204819, Length=642, Percent_Identity=23.5202492211838, Blast_Score=127, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17541856, Length=623, Percent_Identity=22.792937399679, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI25147511, Length=623, Percent_Identity=24.5585874799358, Blast_Score=115, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17553312, Length=618, Percent_Identity=23.462783171521, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17564090, Length=453, Percent_Identity=25.60706401766, Blast_Score=109, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17558820, Length=335, Percent_Identity=25.6716417910448, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI32563687, Length=333, Percent_Identity=25.2252252252252, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17510401, Length=282, Percent_Identity=27.3049645390071, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560308, Length=176, Percent_Identity=31.8181818181818, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6320852, Length=454, Percent_Identity=24.8898678414097, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6324893, Length=456, Percent_Identity=23.9035087719298, Blast_Score=99, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6323903, Length=455, Percent_Identity=24.1758241758242, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI17933690, Length=672, Percent_Identity=26.1904761904762, Blast_Score=224, Evalue=2e-58, Organism=Drosophila melanogaster, GI19921316, Length=690, Percent_Identity=27.536231884058, Blast_Score=211, Evalue=1e-54, Organism=Drosophila melanogaster, GI281366413, Length=444, Percent_Identity=28.8288288288288, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI24666501, Length=444, Percent_Identity=28.8288288288288, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24666497, Length=444, Percent_Identity=28.8288288288288, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI62471689, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI62471679, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI62471683, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI62471685, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24586636, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI62471681, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI62471687, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI24586634, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI22026970, Length=275, Percent_Identity=26.1818181818182, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI24581924, Length=473, Percent_Identity=24.3128964059197, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24653035, Length=152, Percent_Identity=34.2105263157895, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076582, Length=135, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI21356947, Length=361, Percent_Identity=24.3767313019391, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: NA
Molecular weight: Translated: 70449; Mature: 70318
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADTTTSFEVVGSADEAADIRAAVAGLTVPMLLARQCRSRPDAVSIHWMRDGEWQAWTW CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEHH RQYGAQVARMAGALERLGFGRGDRALLMTCPRPEFHVIDSAVLLLGGCPISIYNSSPAER HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHH VRYLAAHCRASLVVVEGRELLARVLAVRAELPDLRHVVVIDPAPTGSGGTGSEAAGGENL HHHHHHHHCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC GGGAAGDVPPGVLRWDDLLAADPVDLEARAATAGPDDPCTVIYTSGTTGVPKGVMLDHRA CCCCCCCCCCCCEEHHHHHCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCEEECCHH VIWQCESYLRRLDRDLTGARWVSYLPVAHIATRFYAQYFHVYAGLEDITCPNPADVESVL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH IDRPPHLFFAPPRLWEKYLISLREWIGAMDDPARATRLTRAMRVGEEAALLELTGGDVPP CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH RLAREREELRPATRELRTRLGLGNLLTGAIGAAPANPQLTAAWIGLGVPMFEGYGLSEST HHHHHHHHHCHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCCCCCCC GMLTVDPFAYRLGSVGRPMPGVELRVAPDGELHFRAGSAFRSYLDDPEQTTAAIDAEGWV CEEEECHHHHHHCCCCCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCHHHEEECCCCCE RTGDLATIDDGYVRLRGRKKELIITAGGENVSPVAVEFALAAQLLVGQVCVLGDGQPALG EECCEEEECCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCE ALVVLDPQAAAVWAGVNGIPFTHVDELAADPRVLAEVGRQIARANDLLVRQEKVRRFHVL EEEEECCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHEWPLDSDELTPTAKLRRDQIAAKYQAEIAAMFAAPANVEIMPRAVAANHSS HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCC >Mature Secondary Structure AADTTTSFEVVGSADEAADIRAAVAGLTVPMLLARQCRSRPDAVSIHWMRDGEWQAWTW CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEHH RQYGAQVARMAGALERLGFGRGDRALLMTCPRPEFHVIDSAVLLLGGCPISIYNSSPAER HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHH VRYLAAHCRASLVVVEGRELLARVLAVRAELPDLRHVVVIDPAPTGSGGTGSEAAGGENL HHHHHHHHCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC GGGAAGDVPPGVLRWDDLLAADPVDLEARAATAGPDDPCTVIYTSGTTGVPKGVMLDHRA CCCCCCCCCCCCEEHHHHHCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCEEECCHH VIWQCESYLRRLDRDLTGARWVSYLPVAHIATRFYAQYFHVYAGLEDITCPNPADVESVL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH IDRPPHLFFAPPRLWEKYLISLREWIGAMDDPARATRLTRAMRVGEEAALLELTGGDVPP CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH RLAREREELRPATRELRTRLGLGNLLTGAIGAAPANPQLTAAWIGLGVPMFEGYGLSEST HHHHHHHHHCHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCCCCCCC GMLTVDPFAYRLGSVGRPMPGVELRVAPDGELHFRAGSAFRSYLDDPEQTTAAIDAEGWV CEEEECHHHHHHCCCCCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCHHHEEECCCCCE RTGDLATIDDGYVRLRGRKKELIITAGGENVSPVAVEFALAAQLLVGQVCVLGDGQPALG EECCEEEECCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCE ALVVLDPQAAAVWAGVNGIPFTHVDELAADPRVLAEVGRQIARANDLLVRQEKVRRFHVL EEEEECCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHEWPLDSDELTPTAKLRRDQIAAKYQAEIAAMFAAPANVEIMPRAVAANHSS HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]