| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is spaC [H]
Identifier: 158318486
GI number: 158318486
Start: 8214923
End: 8215999
Strand: Reverse
Name: spaC [H]
Synonym: Franean1_6754
Alternate gene names: 158318486
Gene position: 8215999-8214923 (Counterclockwise)
Preceding gene: 158318487
Following gene: 158318485
Centisome position: 91.47
GC content: 73.54
Gene sequence:
>1077_bases GTGACGGCAGGACAGTCCCTCGGCGACGGCGCGGCCGGCGTCGCTCTCCTCCATCTGGAGACCGGCAACTGGCCGGCGGC GTACGCGGCGCTAGAGCAGGCCGTCGCCGGCGGCGTCAGCGTCGCCGAGTCCGCCAGCCTCTACTACGGCGCTCCCACCC TCGCCTTCATTCTCACCGGCACCGACCGGCCCAGCCTCGCGCGAGCGACCGCGACCGCCGCAGCGGGGACCACCACGCTG ACCCGTCGCCGTCTCGATGCGGCCCATCGGCGCATCGACACGCACCAGCGCCCGCCCTACGCCGAGTACGACCTGATCCG CGGCCTGACCGGACTCGGTGTCGCGCTGCGCCGCATCGGAGATCTCGACCTGCTCCGCGACGTGCTGACCTACCTGGTGC GTCTCACCGAACCGATCGACGGTCTGCCTGGCTGGTGGTGCGCCCACGGCCCTCACCGGGGCCAGCCGGCTCCGGGCGGG CACGGCAATCACGGTATGGCCCACGGCATCACCGGTCCCCTCGCGCTCCTGGCCCTCGCCCATCTCGACGGCGTCCACGT CGACGGCCACACGGAAGCGATCACACAGATCGTCCGATGGCTCGACGACTGGCAGCAGCGCACCGGTGACGGCGCCGCGT GGTGGCCGCAAACCGTCACCCTCACCGAACTCGAGGACGGTGAGCCCGCCCAGGCCGGCCCGCTGCGCCCCTCGTGGTGT TACGGAACCCCCGGCATCGCCCGCGCCCAGCAGCTCGCCGCCCACGCCCTCGACGACGTCGCCCGCCAGCGCAACGCCGA AGAAGCGTTCACCGGGTGCGTCAGCGACCCCGCGCAGGTCGGCCGTCTCCACGACCGCGGCCTGTGCCACGGAACCGCCG GACTCCTCGCCACCGGGCGCCGCATCGCCGCGGACGCCCTCACCCCGATCCCCCTCTCACCCCTGCTGCAGATGCACCAG CACACCGCCGCCACGGCCGGCGAACCCGCCGGGTTCCTCGACGGCACGACCGGCGCCGACCTGGTCACCGCTGGGACGAC CGCGACCTCGTGGGACGCCTGCCTCCTGCTCTGCTGA
Upstream 100 bases:
>100_bases TGCACCACGCCCGCATGATCGGCCCCGATCTGGCGTCCGAACGGCACTGTCTGCGCCTGGCCCGCGCCCTCGCCCAGACC ACCCTGGCCAGGAGGCCATC
Downstream 100 bases:
>100_bases CCGAAAGGCACGATCATGGACGAGACCCCGTGGAGGCAAATAAACATCACCTGGCCCGGCCCGGACCGTCATCAGCGTGA ACGTCAGGCCATCGATCATC
Product: lanthionine synthetase C family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MTAGQSLGDGAAGVALLHLETGNWPAAYAALEQAVAGGVSVAESASLYYGAPTLAFILTGTDRPSLARATATAAAGTTTL TRRRLDAAHRRIDTHQRPPYAEYDLIRGLTGLGVALRRIGDLDLLRDVLTYLVRLTEPIDGLPGWWCAHGPHRGQPAPGG HGNHGMAHGITGPLALLALAHLDGVHVDGHTEAITQIVRWLDDWQQRTGDGAAWWPQTVTLTELEDGEPAQAGPLRPSWC YGTPGIARAQQLAAHALDDVARQRNAEEAFTGCVSDPAQVGRLHDRGLCHGTAGLLATGRRIAADALTPIPLSPLLQMHQ HTAATAGEPAGFLDGTTGADLVTAGTTATSWDACLLLC
Sequences:
>Translated_358_residues MTAGQSLGDGAAGVALLHLETGNWPAAYAALEQAVAGGVSVAESASLYYGAPTLAFILTGTDRPSLARATATAAAGTTTL TRRRLDAAHRRIDTHQRPPYAEYDLIRGLTGLGVALRRIGDLDLLRDVLTYLVRLTEPIDGLPGWWCAHGPHRGQPAPGG HGNHGMAHGITGPLALLALAHLDGVHVDGHTEAITQIVRWLDDWQQRTGDGAAWWPQTVTLTELEDGEPAQAGPLRPSWC YGTPGIARAQQLAAHALDDVARQRNAEEAFTGCVSDPAQVGRLHDRGLCHGTAGLLATGRRIAADALTPIPLSPLLQMHQ HTAATAGEPAGFLDGTTGADLVTAGTTATSWDACLLLC >Mature_357_residues TAGQSLGDGAAGVALLHLETGNWPAAYAALEQAVAGGVSVAESASLYYGAPTLAFILTGTDRPSLARATATAAAGTTTLT RRRLDAAHRRIDTHQRPPYAEYDLIRGLTGLGVALRRIGDLDLLRDVLTYLVRLTEPIDGLPGWWCAHGPHRGQPAPGGH GNHGMAHGITGPLALLALAHLDGVHVDGHTEAITQIVRWLDDWQQRTGDGAAWWPQTVTLTELEDGEPAQAGPLRPSWCY GTPGIARAQQLAAHALDDVARQRNAEEAFTGCVSDPAQVGRLHDRGLCHGTAGLLATGRRIAADALTPIPLSPLLQMHQH TAATAGEPAGFLDGTTGADLVTAGTTATSWDACLLLC
Specific function: Could be implicated in the processing or the export process of the subtilin lantibiotic [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.epidermidis epiC and L.lactis nisC [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007822 - InterPro: IPR020452 [H]
Pfam domain/function: PF05147 LANC_like [H]
EC number: NA
Molecular weight: Translated: 37498; Mature: 37366
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGQSLGDGAAGVALLHLETGNWPAAYAALEQAVAGGVSVAESASLYYGAPTLAFILTG CCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHCCCEEECCCEEEEEEEC TDRPSLARATATAAAGTTTLTRRRLDAAHRRIDTHQRPPYAEYDLIRGLTGLGVALRRIG CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC DLDLLRDVLTYLVRLTEPIDGLPGWWCAHGPHRGQPAPGGHGNHGMAHGITGPLALLALA CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH HLDGVHVDGHTEAITQIVRWLDDWQQRTGDGAAWWPQTVTLTELEDGEPAQAGPLRPSWC HHCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC YGTPGIARAQQLAAHALDDVARQRNAEEAFTGCVSDPAQVGRLHDRGLCHGTAGLLATGR CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCHHHCCCCCCCHHHHHCCC RIAADALTPIPLSPLLQMHQHTAATAGEPAGFLDGTTGADLVTAGTTATSWDACLLLC HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEC >Mature Secondary Structure TAGQSLGDGAAGVALLHLETGNWPAAYAALEQAVAGGVSVAESASLYYGAPTLAFILTG CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHCCCEEECCCEEEEEEEC TDRPSLARATATAAAGTTTLTRRRLDAAHRRIDTHQRPPYAEYDLIRGLTGLGVALRRIG CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC DLDLLRDVLTYLVRLTEPIDGLPGWWCAHGPHRGQPAPGGHGNHGMAHGITGPLALLALA CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH HLDGVHVDGHTEAITQIVRWLDDWQQRTGDGAAWWPQTVTLTELEDGEPAQAGPLRPSWC HHCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC YGTPGIARAQQLAAHALDDVARQRNAEEAFTGCVSDPAQVGRLHDRGLCHGTAGLLATGR CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCHHHCCCCCCCHHHHHCCC RIAADALTPIPLSPLLQMHQHTAATAGEPAGFLDGTTGADLVTAGTTATSWDACLLLC HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1539969; 1735728 [H]