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The map label for this gene is yhgF [H]

Identifier: 158318407

GI number: 158318407

Start: 8102830

End: 8105535

Strand: Direct

Name: yhgF [H]

Synonym: Franean1_6672

Alternate gene names: 158318407

Gene position: 8102830-8105535 (Clockwise)

Preceding gene: 158318405

Following gene: 158318415

Centisome position: 90.21

GC content: 74.39

Gene sequence:

>2706_bases
GTGTCCGTCTCGGAGACGGTGTCTGTCCAGGCGCGGATCGCCGCGGAGCTGGGCGTGCGCGAGGGGCAGGTGGCCTCGGC
GATCGACCTGCTCGACGGCGGTGCGACAGTGCCGTTCATCGCCCGGTACCGCAAGGAGGTGACCGGCGCCCTCGACGACG
CGCAGCTGCGAACCCTGGAGGAGCGGCTGCGGTACCTGCGGGAGCTGGCGGAGCGGCGGGCGGCGATCCTGGAGTCCATC
CGGAGCCAGGGCAAGCTGGACGACGCCCTCGAGGCGCAGATCATGGCCGCCGACACCAAGGCCCGCCTCGAGGACATCTA
CCTCCCCTACAAGCCGAAGCGCCGGACGAAGGCGCAGATCGCGCGTGAGGCCGGGCTGGAGCCGCTCGCGGACGCGCTGC
TGGCCGACCGCTCGCTCGACCCCCGGGCGGAGGCGGAGCGCTACGTCGACGCCGAGAAGGGCGTCGCGGACGCCACGGCC
GCGCTCGAGGGCGCCCGCGCCATCCTGGTGGAGCGCTTCGCGGAGGACGCCGACCTGATCGGTGCCCTGCGCGAGCAGAT
GTGGTCCCGTGGTTATCTCGTCAGCCGGGTCCGCGAGGGCAAGGAGTCCGACGGCGCGAAGTTCGCCGACTACTTCGACT
TCGCCGAACCGTTCACGAAGCTGCCGTCCCACCGGATCCTCGCGATGTTCCGCGGTGAGAAGGAGGAGATCCTCGACCTC
ACCCTGGAGCCGGACGCGCCCGCCGACCCGGCCGAGCCCCCGGCCCCCGGCCCCACCGACTACGAGCGGCGCATCGCCGA
GCGTTTCGACATCGCCGACGCCGGCCGGCCGGCCGACCGCTGGCTGCTCGACGCGGTGCGCTGGGCCTGGCGGACGCGGG
TCCTGGTCCATCTCGGCGTCGACCTCCGCATGCGGCTGTGGACGTCCGCCGAGGACACCGCGGTGCGCGTGTTCGCGGCG
AACCTGCGTGACCTGCTGCTCGCCGCCCCCGCCGGGCAGCGGCGCACCATGGGCCTCGACCCGGGGTTCCGTACCGGCGT
CAAGGTGGCGGTCGTCGACGCGACCGGGAAGGTCGTCGCCACCGACACGATCTACCCGCACGTCCCGGCCCGCCGCTGGG
ACGACTCGGTGGCCTCGCTGGCGCGGCTGTCCGCCGAGCACGGCGTCGAGCTGATCGCCATCGGCAACGGGACGGCCTCC
CGGGAGACCGACAAGCTGGCCGACGACCTGATCCGCCGGCATCCCGAGCTGAAGCTGACCAAGGTGATGGTGTCGGAGGC
CGGTGCCTCCGTGTACTCCGCCTCCGCCTACGCGTCCCAGGAACTGCCTTCGATGGACGTCTCCCTGCGCGGCGCGGTGT
CCATCGCGCGCCGCCTGCAGGACCCGCTCGCCGAGCTCGTCAAGATCGACCCCAAGTCGATCGGGGTCGGGCAGTACCAG
CACGACCTGGCCGAGGCCAGGATGTCGTCCTCCCTGGACGCCGTCGTCGAGGACTGTGTGAACGCGGTCGGGGTGGACGT
CAACACCGCCTCGGCGCCGTTGCTCTCCCGGGTCTCCGGCATCAGCGGCGGGCTGGCCGACAACATCGTCCGCCACCGTG
ACAGCAACGGCCCGTTCCGGTCGCGGACGGGGCTGCTGGACGTGGCCCGGCTGGGCCCGAAGGCGTTCGAGCAGTGCGCC
GGCTTCCTGCGCATCACCGGCGGCGACGACCCGCTGGACAGCTCCAGCGTGCACCCGGAGTCCTACCCGGTAGTCCGGCG
GATCCTGACGGTGACCGGTGGCGACCTGCGCGCGCTGATCGGCGACACGAAGACACTGCGCTCGCTCAAGCCCACCGAGT
TCGTCGACGACACGGTCGGCCTGCCGACGGTGACCGACATCCTCGCCGAGCTGGAGAAGCCCGGCCGCGACCCGCGGCCG
GCGTTCCGGACGGCCGAGTTCACCGAGGGCGTCGAAACCCTCGCCGACCTGGTGCCGGGCATGATCCTCGAGGGCGTGGT
GACCAACGTCGCCGCGTTCGGCGCCTTCGTCGACATCGGCGTGCACCAGGACGGCCTCGTCCACGTCTCGGCGATGTCGA
AGAACTTCGTCAGCGACCCCCGTGAGGTCGCCAAGCCCGGGGACATCGTGCGGGTGAAGGTCCTCGACGTCGACATCCCG
CGCAAGCGGATCTCGCTCACGCTGCGCCTCGACGACGAGCCGGGCGCGGCGGACGCCGGCGGCGGGCAGAGCGGTCAGGG
TGGCCAGGGCGGTGAGCGGCGCGCGGGCCGCGGCGGCCGCGGCGGGCAGAACCGCGGTGGCGCCGGTGGCGCCGGTGGCG
CCGGCCGGAGCCAGGAGCGCGACGGCGGGCAGCCCGCCGACCAGCAGGGCGGCCGGCAGGCGGCAGCGGCCGGCGGCGGG
CAGCCGGCCGGCGGCCAGCCCGGAGGCGGGCGTGGCGGTCCGGGGCAGCGGGGCGGCCCCGGCCAGCGCGGTGGTCCGGG
CCAGCGCGGTGGCGGTGGCGGTGCGGGTCAGCGCGGCGGTGCCGGTGGCGCGGGTGGCGGTCAGCGCGGTGGCGGCGGTG
GCCAGCGCGGCGCCGGTCACCGCGGCGGGCGGACCGACGGGGCCATCGCCGACGCGCTGCGCCGCGCCGGTCTGGTGACC
GGCGACGAGGTCACCCTCGGCGGAAAGCAGGACGACAGCCGGGACAGCCGCCGCGGGCGCCGATAG

Upstream 100 bases:

>100_bases
CGGAGATCCGACGAGAGGGATTATCGGGAGACCAACCCCCGGGTCCGAACCGTGGGGACGATGAGCACACAGGCAAAGGC
GGTTGCGGATCGTGACGACG

Downstream 100 bases:

>100_bases
CCGCGGCCGGGGTTCGTTCCGAAGTGTGTTGCCTCAGCGGCGCGTGGCGTGGCTGAGGCAACACACTTCGACGGCCGTGG
ATCGCACCTCGAGGCCGTGG

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 901; Mature: 900

Protein sequence:

>901_residues
MSVSETVSVQARIAAELGVREGQVASAIDLLDGGATVPFIARYRKEVTGALDDAQLRTLEERLRYLRELAERRAAILESI
RSQGKLDDALEAQIMAADTKARLEDIYLPYKPKRRTKAQIAREAGLEPLADALLADRSLDPRAEAERYVDAEKGVADATA
ALEGARAILVERFAEDADLIGALREQMWSRGYLVSRVREGKESDGAKFADYFDFAEPFTKLPSHRILAMFRGEKEEILDL
TLEPDAPADPAEPPAPGPTDYERRIAERFDIADAGRPADRWLLDAVRWAWRTRVLVHLGVDLRMRLWTSAEDTAVRVFAA
NLRDLLLAAPAGQRRTMGLDPGFRTGVKVAVVDATGKVVATDTIYPHVPARRWDDSVASLARLSAEHGVELIAIGNGTAS
RETDKLADDLIRRHPELKLTKVMVSEAGASVYSASAYASQELPSMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQ
HDLAEARMSSSLDAVVEDCVNAVGVDVNTASAPLLSRVSGISGGLADNIVRHRDSNGPFRSRTGLLDVARLGPKAFEQCA
GFLRITGGDDPLDSSSVHPESYPVVRRILTVTGGDLRALIGDTKTLRSLKPTEFVDDTVGLPTVTDILAELEKPGRDPRP
AFRTAEFTEGVETLADLVPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIP
RKRISLTLRLDDEPGAADAGGGQSGQGGQGGERRAGRGGRGGQNRGGAGGAGGAGRSQERDGGQPADQQGGRQAAAAGGG
QPAGGQPGGGRGGPGQRGGPGQRGGPGQRGGGGGAGQRGGAGGAGGGQRGGGGGQRGAGHRGGRTDGAIADALRRAGLVT
GDEVTLGGKQDDSRDSRRGRR

Sequences:

>Translated_901_residues
MSVSETVSVQARIAAELGVREGQVASAIDLLDGGATVPFIARYRKEVTGALDDAQLRTLEERLRYLRELAERRAAILESI
RSQGKLDDALEAQIMAADTKARLEDIYLPYKPKRRTKAQIAREAGLEPLADALLADRSLDPRAEAERYVDAEKGVADATA
ALEGARAILVERFAEDADLIGALREQMWSRGYLVSRVREGKESDGAKFADYFDFAEPFTKLPSHRILAMFRGEKEEILDL
TLEPDAPADPAEPPAPGPTDYERRIAERFDIADAGRPADRWLLDAVRWAWRTRVLVHLGVDLRMRLWTSAEDTAVRVFAA
NLRDLLLAAPAGQRRTMGLDPGFRTGVKVAVVDATGKVVATDTIYPHVPARRWDDSVASLARLSAEHGVELIAIGNGTAS
RETDKLADDLIRRHPELKLTKVMVSEAGASVYSASAYASQELPSMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQ
HDLAEARMSSSLDAVVEDCVNAVGVDVNTASAPLLSRVSGISGGLADNIVRHRDSNGPFRSRTGLLDVARLGPKAFEQCA
GFLRITGGDDPLDSSSVHPESYPVVRRILTVTGGDLRALIGDTKTLRSLKPTEFVDDTVGLPTVTDILAELEKPGRDPRP
AFRTAEFTEGVETLADLVPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIP
RKRISLTLRLDDEPGAADAGGGQSGQGGQGGERRAGRGGRGGQNRGGAGGAGGAGRSQERDGGQPADQQGGRQAAAAGGG
QPAGGQPGGGRGGPGQRGGPGQRGGPGQRGGGGGAGQRGGAGGAGGGQRGGGGGQRGAGHRGGRTDGAIADALRRAGLVT
GDEVTLGGKQDDSRDSRRGRR
>Mature_900_residues
SVSETVSVQARIAAELGVREGQVASAIDLLDGGATVPFIARYRKEVTGALDDAQLRTLEERLRYLRELAERRAAILESIR
SQGKLDDALEAQIMAADTKARLEDIYLPYKPKRRTKAQIAREAGLEPLADALLADRSLDPRAEAERYVDAEKGVADATAA
LEGARAILVERFAEDADLIGALREQMWSRGYLVSRVREGKESDGAKFADYFDFAEPFTKLPSHRILAMFRGEKEEILDLT
LEPDAPADPAEPPAPGPTDYERRIAERFDIADAGRPADRWLLDAVRWAWRTRVLVHLGVDLRMRLWTSAEDTAVRVFAAN
LRDLLLAAPAGQRRTMGLDPGFRTGVKVAVVDATGKVVATDTIYPHVPARRWDDSVASLARLSAEHGVELIAIGNGTASR
ETDKLADDLIRRHPELKLTKVMVSEAGASVYSASAYASQELPSMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQH
DLAEARMSSSLDAVVEDCVNAVGVDVNTASAPLLSRVSGISGGLADNIVRHRDSNGPFRSRTGLLDVARLGPKAFEQCAG
FLRITGGDDPLDSSSVHPESYPVVRRILTVTGGDLRALIGDTKTLRSLKPTEFVDDTVGLPTVTDILAELEKPGRDPRPA
FRTAEFTEGVETLADLVPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIPR
KRISLTLRLDDEPGAADAGGGQSGQGGQGGERRAGRGGRGGQNRGGAGGAGGAGRSQERDGGQPADQQGGRQAAAAGGGQ
PAGGQPGGGRGGPGQRGGPGQRGGPGQRGGGGGAGQRGGAGGAGGGQRGGGGGQRGAGHRGGRTDGAIADALRRAGLVTG
DEVTLGGKQDDSRDSRRGRR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=785, Percent_Identity=33.8853503184713, Blast_Score=385, Evalue=1e-107,
Organism=Homo sapiens, GI27597090, Length=709, Percent_Identity=22.5669957686883, Blast_Score=109, Evalue=1e-23,
Organism=Escherichia coli, GI87082262, Length=756, Percent_Identity=60.4497354497355, Blast_Score=892, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=41.5730337078652, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=716, Percent_Identity=28.7709497206704, Blast_Score=211, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17552892, Length=257, Percent_Identity=27.2373540856031, Blast_Score=73, Evalue=6e-13,
Organism=Drosophila melanogaster, GI62484314, Length=802, Percent_Identity=31.1720698254364, Blast_Score=362, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 95097; Mature: 94966

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00037 MYB_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSETVSVQARIAAELGVREGQVASAIDLLDGGATVPFIARYRKEVTGALDDAQLRTLE
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
ERLRYLRELAERRAAILESIRSQGKLDDALEAQIMAADTKARLEDIYLPYKPKRRTKAQI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHH
AREAGLEPLADALLADRSLDPRAEAERYVDAEKGVADATAALEGARAILVERFAEDADLI
HHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GALREQMWSRGYLVSRVREGKESDGAKFADYFDFAEPFTKLPSHRILAMFRGEKEEILDL
HHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHEHHHHCCCHHHEEEE
TLEPDAPADPAEPPAPGPTDYERRIAERFDIADAGRPADRWLLDAVRWAWRTRVLVHLGV
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEECC
DLRMRLWTSAEDTAVRVFAANLRDLLLAAPAGQRRTMGLDPGFRTGVKVAVVDATGKVVA
CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
TDTIYPHVPARRWDDSVASLARLSAEHGVELIAIGNGTASRETDKLADDLIRRHPELKLT
ECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHH
KVMVSEAGASVYSASAYASQELPSMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQ
HHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
HDLAEARMSSSLDAVVEDCVNAVGVDVNTASAPLLSRVSGISGGLADNIVRHRDSNGPFR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
SRTGLLDVARLGPKAFEQCAGFLRITGGDDPLDSSSVHPESYPVVRRILTVTGGDLRALI
CCCCHHHHHHCCHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
GDTKTLRSLKPTEFVDDTVGLPTVTDILAELEKPGRDPRPAFRTAEFTEGVETLADLVPG
CCHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
MILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIP
HHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCCHHHCCCCCEEEEEEEECCCC
RKRISLTLRLDDEPGAADAGGGQSGQGGQGGERRAGRGGRGGQNRGGAGGAGGAGRSQER
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGGQPADQQGGRQAAAAGGGQPAGGQPGGGRGGPGQRGGPGQRGGPGQRGGGGGAGQRGG
CCCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGGAGGGQRGGGGGQRGAGHRGGRTDGAIADALRRAGLVTGDEVTLGGKQDDSRDSRRGR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHCCC
R
C
>Mature Secondary Structure 
SVSETVSVQARIAAELGVREGQVASAIDLLDGGATVPFIARYRKEVTGALDDAQLRTLE
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
ERLRYLRELAERRAAILESIRSQGKLDDALEAQIMAADTKARLEDIYLPYKPKRRTKAQI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHH
AREAGLEPLADALLADRSLDPRAEAERYVDAEKGVADATAALEGARAILVERFAEDADLI
HHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GALREQMWSRGYLVSRVREGKESDGAKFADYFDFAEPFTKLPSHRILAMFRGEKEEILDL
HHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHEHHHHCCCHHHEEEE
TLEPDAPADPAEPPAPGPTDYERRIAERFDIADAGRPADRWLLDAVRWAWRTRVLVHLGV
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEECC
DLRMRLWTSAEDTAVRVFAANLRDLLLAAPAGQRRTMGLDPGFRTGVKVAVVDATGKVVA
CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE
TDTIYPHVPARRWDDSVASLARLSAEHGVELIAIGNGTASRETDKLADDLIRRHPELKLT
ECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHH
KVMVSEAGASVYSASAYASQELPSMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQ
HHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
HDLAEARMSSSLDAVVEDCVNAVGVDVNTASAPLLSRVSGISGGLADNIVRHRDSNGPFR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
SRTGLLDVARLGPKAFEQCAGFLRITGGDDPLDSSSVHPESYPVVRRILTVTGGDLRALI
CCCCHHHHHHCCHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
GDTKTLRSLKPTEFVDDTVGLPTVTDILAELEKPGRDPRPAFRTAEFTEGVETLADLVPG
CCHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
MILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIP
HHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCCHHHCCCCCEEEEEEEECCCC
RKRISLTLRLDDEPGAADAGGGQSGQGGQGGERRAGRGGRGGQNRGGAGGAGGAGRSQER
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGGQPADQQGGRQAAAAGGGQPAGGQPGGGRGGPGQRGGPGQRGGPGQRGGGGGAGQRGG
CCCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGGAGGGQRGGGGGQRGAGHRGGRTDGAIADALRRAGLVTGDEVTLGGKQDDSRDSRRGR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]