Click here to switch to the map view.

The map label for this gene is ytfH [H]

Identifier: 158318372

GI number: 158318372

Start: 8068585

End: 8068944

Strand: Reverse

Name: ytfH [H]

Synonym: Franean1_6637

Alternate gene names: 158318372

Gene position: 8068944-8068585 (Counterclockwise)

Preceding gene: 158318374

Following gene: 158318370

Centisome position: 89.83

GC content: 69.72

Gene sequence:

>360_bases
GTGGCGGACTGCCGTATCCGGGCGGTGACCGACCTGTTCATCCACATCTGGGACCCGGTCGTGCTGGTGGCTCTTCGCGC
GGGGCCGTGCCGGCGCCGCGAGCTGCGCGTCGCGATCGGCGGTATGAGCGACAAGGTCCTCACCGAATCGCTACGCCGGC
TCGGCGCCTACGGTCTGGTGGCCCGCCGTGCGTTCGCGCAGGCCCCGCCGCGGGTCGAATACGCGCTGACTCCACTCGGG
CAGAGCCTGGTGGACGGTCCGATGGAAGCGCTCGGAAACTGGATCACCGAGCATGGCGAGGAACTACAGGACGCGCAGGA
CAGATCGGCGGAGCTCCAGGCGCGTACCGGCGCTGACTGA

Upstream 100 bases:

>100_bases
GGACCGAGACCGTAAGGCGGCCGTTACACACCAATCGGTGCACGCGAGACCTGCGACGATGGCCGGGATGAGCGATCAGG
GACGTCACTGCGAGGACCTG

Downstream 100 bases:

>100_bases
AACCGGAGCGGCGGATGCGGGTACGCCCCGGGAACCGGGCGTGTCAGCGGCTCGCCGGTTCGGCGAACAGCGCGGCGAAT
CTGGCCGCGCCTTCCCGCGC

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MADCRIRAVTDLFIHIWDPVVLVALRAGPCRRRELRVAIGGMSDKVLTESLRRLGAYGLVARRAFAQAPPRVEYALTPLG
QSLVDGPMEALGNWITEHGEELQDAQDRSAELQARTGAD

Sequences:

>Translated_119_residues
MADCRIRAVTDLFIHIWDPVVLVALRAGPCRRRELRVAIGGMSDKVLTESLRRLGAYGLVARRAFAQAPPRVEYALTPLG
QSLVDGPMEALGNWITEHGEELQDAQDRSAELQARTGAD
>Mature_118_residues
ADCRIRAVTDLFIHIWDPVVLVALRAGPCRRRELRVAIGGMSDKVLTESLRRLGAYGLVARRAFAQAPPRVEYALTPLGQ
SLVDGPMEALGNWITEHGEELQDAQDRSAELQARTGAD

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=108, Percent_Identity=39.8148148148148, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13095; Mature: 12964

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADCRIRAVTDLFIHIWDPVVLVALRAGPCRRRELRVAIGGMSDKVLTESLRRLGAYGLV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCHHHHHHHHHHHHHHHHH
ARRAFAQAPPRVEYALTPLGQSLVDGPMEALGNWITEHGEELQDAQDRSAELQARTGAD
HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ADCRIRAVTDLFIHIWDPVVLVALRAGPCRRRELRVAIGGMSDKVLTESLRRLGAYGLV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCHHHHHHHHHHHHHHHHH
ARRAFAQAPPRVEYALTPLGQSLVDGPMEALGNWITEHGEELQDAQDRSAELQARTGAD
HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]