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The map label for this gene is nahR [H]

Identifier: 158318367

GI number: 158318367

Start: 8064498

End: 8065430

Strand: Reverse

Name: nahR [H]

Synonym: Franean1_6632

Alternate gene names: 158318367

Gene position: 8065430-8064498 (Counterclockwise)

Preceding gene: 158318369

Following gene: 158318364

Centisome position: 89.8

GC content: 73.31

Gene sequence:

>933_bases
ATGCATGCCATGCAATCGACGTCCTCGCTGGACCTCAACCTCCTGGTGGCTCTCGACGCCCTGCTGGAGGAGCGGAGCGT
CAACGCCGCCGCGCGGCGGCTGCGGCTGACCGAGTCCGCGGTCAGTCGTGCGCTGGGTCGCCTACGCCGGGCGATGGACG
ACCCGGTCCTCGTGCGCGCCGGTCATCGGATGGTGCCCACCCCGCGGGCGCTGGCCGTCCAGGCCGAGGTGCATGCCCTG
GTCGAACGGGCCCACGCGGTGTTCACCCCGATTCGGGAACCCGACCTGGCCACCCTGGCCAGGACGTTCACCATCCTGGC
CAGCGACGCGCTGACCACCGCGATCGGCGTTGATCTGCTCGACCGGTTGACTCGGGATGCCCCGGGTGTGCGGGTGCGGT
TCCTCCCCGAGCCGTCCGCGACCGACGACCCCCTCCGCGACGGAACCGCCGACCTGGAGATCGGTGACATCGACTCGACC
TCGCCGGAAATCCACATCGAGGTCCTGGGTGAGGAGCAGGCCCTTGCCGTCGTCCGCGCCGGGCATCCACTGACCCGGGG
CCGCCTGACGCCGGAACGCCTCGCCGCCGCCAGGCACGTCACGGCGTCCCGCCGGGGGCGGTTCGCCGGCCCGCTGGACG
AGGTCCTCGCGGCGCGTGGCCTGCGCCGGACGGTGGCGGTCTCGGTTCCGTCCCACTCCGCCGCGCTGCTGCTCGTCGCC
GGCAGCGACCTGGTCGGCCTGGTACCGGCTCGGCTCGGCCGCGGCCTGCTCGACAGCCTCGGCCTGGTGGCCCTCGACCT
CGGACTCGACCTGCCGACCCTGACGATCGCGCAGGCGTGGCATCCCCGCTATGAGGCCGACGCGCCGCATCGCTGGCTTC
GCGGCCACGTGCGCGACACCATCCGGCTCGCGCTCGCGCTCGATCCCCCGTGA

Upstream 100 bases:

>100_bases
GCCGGGGACGGGCCGAGGGGGCAGCCGGGGAGTGTTCGGTCACGAGACGAGCGTAGGCAGCAGACGATCAGCACTCAAAT
GAAACTTACTCAATGGCAAG

Downstream 100 bases:

>100_bases
CAGGCCCGCCGCGGACACCGTGCCGCGTACTTTCCTTCGGATGGCTGCCCGGGCCGCCCCGGGCAGCCATCAGGCGTTCA
GCCAGTTGCGCCGGTCTCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MHAMQSTSSLDLNLLVALDALLEERSVNAAARRLRLTESAVSRALGRLRRAMDDPVLVRAGHRMVPTPRALAVQAEVHAL
VERAHAVFTPIREPDLATLARTFTILASDALTTAIGVDLLDRLTRDAPGVRVRFLPEPSATDDPLRDGTADLEIGDIDST
SPEIHIEVLGEEQALAVVRAGHPLTRGRLTPERLAAARHVTASRRGRFAGPLDEVLAARGLRRTVAVSVPSHSAALLLVA
GSDLVGLVPARLGRGLLDSLGLVALDLGLDLPTLTIAQAWHPRYEADAPHRWLRGHVRDTIRLALALDPP

Sequences:

>Translated_310_residues
MHAMQSTSSLDLNLLVALDALLEERSVNAAARRLRLTESAVSRALGRLRRAMDDPVLVRAGHRMVPTPRALAVQAEVHAL
VERAHAVFTPIREPDLATLARTFTILASDALTTAIGVDLLDRLTRDAPGVRVRFLPEPSATDDPLRDGTADLEIGDIDST
SPEIHIEVLGEEQALAVVRAGHPLTRGRLTPERLAAARHVTASRRGRFAGPLDEVLAARGLRRTVAVSVPSHSAALLLVA
GSDLVGLVPARLGRGLLDSLGLVALDLGLDLPTLTIAQAWHPRYEADAPHRWLRGHVRDTIRLALALDPP
>Mature_310_residues
MHAMQSTSSLDLNLLVALDALLEERSVNAAARRLRLTESAVSRALGRLRRAMDDPVLVRAGHRMVPTPRALAVQAEVHAL
VERAHAVFTPIREPDLATLARTFTILASDALTTAIGVDLLDRLTRDAPGVRVRFLPEPSATDDPLRDGTADLEIGDIDST
SPEIHIEVLGEEQALAVVRAGHPLTRGRLTPERLAAARHVTASRRGRFAGPLDEVLAARGLRRTVAVSVPSHSAALLLVA
GSDLVGLVPARLGRGLLDSLGLVALDLGLDLPTLTIAQAWHPRYEADAPHRWLRGHVRDTIRLALALDPP

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=293, Percent_Identity=24.9146757679181, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786820, Length=275, Percent_Identity=23.6363636363636, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790147, Length=297, Percent_Identity=23.9057239057239, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081766, Length=257, Percent_Identity=25.6809338521401, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33358; Mature: 33358

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAMQSTSSLDLNLLVALDALLEERSVNAAARRLRLTESAVSRALGRLRRAMDDPVLVRA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GHRMVPTPRALAVQAEVHALVERAHAVFTPIREPDLATLARTFTILASDALTTAIGVDLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DRLTRDAPGVRVRFLPEPSATDDPLRDGTADLEIGDIDSTSPEIHIEVLGEEQALAVVRA
HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEC
GHPLTRGRLTPERLAAARHVTASRRGRFAGPLDEVLAARGLRRTVAVSVPSHSAALLLVA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEEE
GSDLVGLVPARLGRGLLDSLGLVALDLGLDLPTLTIAQAWHPRYEADAPHRWLRGHVRDT
CCCHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHE
IRLALALDPP
EEEEEEECCC
>Mature Secondary Structure
MHAMQSTSSLDLNLLVALDALLEERSVNAAARRLRLTESAVSRALGRLRRAMDDPVLVRA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GHRMVPTPRALAVQAEVHALVERAHAVFTPIREPDLATLARTFTILASDALTTAIGVDLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DRLTRDAPGVRVRFLPEPSATDDPLRDGTADLEIGDIDSTSPEIHIEVLGEEQALAVVRA
HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEC
GHPLTRGRLTPERLAAARHVTASRRGRFAGPLDEVLAARGLRRTVAVSVPSHSAALLLVA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEEE
GSDLVGLVPARLGRGLLDSLGLVALDLGLDLPTLTIAQAWHPRYEADAPHRWLRGHVRDT
CCCHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHE
IRLALALDPP
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]