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The map label for this gene is ykgD [C]

Identifier: 158318343

GI number: 158318343

Start: 8042000

End: 8042992

Strand: Direct

Name: ykgD [C]

Synonym: Franean1_6608

Alternate gene names: 158318343

Gene position: 8042000-8042992 (Clockwise)

Preceding gene: 158318341

Following gene: 158318345

Centisome position: 89.53

GC content: 70.59

Gene sequence:

>993_bases
ATGGATGTGCTGAGCGACGCGGTCACGATGTTGCGCACGGGTCGTCCTCACTCGAACAGCAACCGCCTGTGGGCGCCTTG
GGGCATCCGCTTCCCCCCGACCGACGGCGCGGGATTCCACATCGTGCTCATGGGCACCTGCTGGCTGCTGCGGGCGGGCG
CCAGGCCACTCCGGCTCGCCGCCGGTGACATCGTGTTACTGCCTCGAGAACCAGGGCATGCCCTCGCCGATGATCCGGCC
AGCCCGCTCACCGACTTCCGGGCCGACCCCCACGGGCCGATCCCCAGCGAGCATGCGGACGGATACGGCGGGTCCGGCCC
GGGCGGCCGGACCGTCACCGAGTTGCTCTGTGGCGCCTACATGTTCGACCGCTTCCGTCTGCACCCGCTGTTGGCGGACC
TACCCGACGTCATCCACCTGCCCGCGCGGGTCGGGCATCACCCGAGGCTGCGGGCCGCGGTGGATCTGCTCGGCGCCGAG
CTCGCCGAGCCTCGCGCGGGTGCGGCCGCGAGCATGTCCGCACTGCTCGACCTCCTGCTGCTCTACATGCTTCGCGCCTG
GTTCGACGATCATTCGACCGGCTCGTCGACCGGCTCGTCGACCGGCTGGTCCGCGGCACTCGCGGATCCCGCGGTGAGCG
CGGCGCTGCGGGCGATGCACGCCGAACCGGAAATGCCATGGACGGTGCGTGAGCTCGGCGCGCGGGTCGGACTGTCCCGT
ACGGTCTTCGCGCAGCGGTTCACCGCACTCGTCGGCAAGCCGCCGTTGGCGTACCTGACCTGGTGGCGGATGACCATGGC
AGCGAGGCTGCTGCGGGAGACCGACTCACCGCTGCCTGCGGTGGCCCGGCGCTGCGGCTATTCGTCGGAGTTCGCCTTCG
CCAAGACCTTCAAGCGCGAGTTCGGCGTCCCGCCGGGCGCATTCCGGCGAGAGGGACGGCCACCATCCGGTTCACCCGCG
GACGCCTCGCCACTGACGGCAACCTTGTCATGA

Upstream 100 bases:

>100_bases
AGATCGACCGTAGGACCGGCTCAGCGGGACGATCCATGTCTAGATGTCCCGCCTTCATGTTCGATCGTCCGGCCATGCGG
ATGCTGGGTAAGGTTCGGCG

Downstream 100 bases:

>100_bases
CGCGCGGCGGTCCCGCCCACTCCCACTCGTTCTTCCCGGGATCCGCTGGTCCAGCACCATCCCGATCAGCAGCGCCAACG
GGTCGTTCGTCAGTGTCGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAGFHIVLMGTCWLLRAGARPLRLAAGDIVLLPREPGHALADDPA
SPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCGAYMFDRFRLHPLLADLPDVIHLPARVGHHPRLRAAVDLLGAE
LAEPRAGAAASMSALLDLLLLYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARVGLSR
TVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKTFKREFGVPPGAFRREGRPPSGSPA
DASPLTATLS

Sequences:

>Translated_330_residues
MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAGFHIVLMGTCWLLRAGARPLRLAAGDIVLLPREPGHALADDPA
SPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCGAYMFDRFRLHPLLADLPDVIHLPARVGHHPRLRAAVDLLGAE
LAEPRAGAAASMSALLDLLLLYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARVGLSR
TVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKTFKREFGVPPGAFRREGRPPSGSPA
DASPLTATLS
>Mature_330_residues
MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAGFHIVLMGTCWLLRAGARPLRLAAGDIVLLPREPGHALADDPA
SPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCGAYMFDRFRLHPLLADLPDVIHLPARVGHHPRLRAAVDLLGAE
LAEPRAGAAASMSALLDLLLLYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARVGLSR
TVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKTFKREFGVPPGAFRREGRPPSGSPA
DASPLTATLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=255, Percent_Identity=28.2352941176471, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35478; Mature: 35478

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAGFHIVLMGTCWLLRAGARPLRLA
CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEE
AGDIVLLPREPGHALADDPASPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCGAY
CCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
MFDRFRLHPLLADLPDVIHLPARVGHHPRLRAAVDLLGAELAEPRAGAAASMSALLDLLL
HHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARVGLSR
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
TVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKTFKRE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH
FGVPPGAFRREGRPPSGSPADASPLTATLS
HCCCCHHHHCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MDVLSDAVTMLRTGRPHSNSNRLWAPWGIRFPPTDGAGFHIVLMGTCWLLRAGARPLRLA
CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEE
AGDIVLLPREPGHALADDPASPLTDFRADPHGPIPSEHADGYGGSGPGGRTVTELLCGAY
CCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
MFDRFRLHPLLADLPDVIHLPARVGHHPRLRAAVDLLGAELAEPRAGAAASMSALLDLLL
HHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LYMLRAWFDDHSTGSSTGSSTGWSAALADPAVSAALRAMHAEPEMPWTVRELGARVGLSR
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
TVFAQRFTALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVARRCGYSSEFAFAKTFKRE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH
FGVPPGAFRREGRPPSGSPADASPLTATLS
HCCCCHHHHCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]