| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318342
Identifier: 158318342
GI number: 158318342
Start: 8040847
End: 8041869
Strand: Reverse
Name: 158318342
Synonym: Franean1_6607
Alternate gene names: NA
Gene position: 8041869-8040847 (Counterclockwise)
Preceding gene: 158318344
Following gene: 158318340
Centisome position: 89.53
GC content: 69.4
Gene sequence:
>1023_bases ATGAAGATCGCACTCAATGGCGCGAGCGGATTCACCGGCCGCCTGGCGGTCGCGGAACTCGCCCGCCGCGGCATCGACGC GGTGCTCGTCGGGCGCGACCCCGAACGGCTGCGTGCGGCCGCGGCCGGTACCGGCTTCGAGGTCCGGATCGCGGACATCG GCGACCAGGACGCATTGAGGTCCGCGTTCGGTGACGTTGACGCGGTTGTCAACACGGCCGGACCGTTTGCCCGACTCGGC GCACCTGTCGTGCGCGCCGCAATCGCTGCCGAGGCGCACTATGTCGACACGACCGGCGAGCAGCAGTACATCAGCGATGT CTTTGGCGCCTTTGCCAGCGCCGCCGCGGATGCTGGCGTGACGATCGTTCCGGCGATGGCCGACGACGGCGGCCCGAGCG ACTTCATCGGCCACCTGGTCGGAGAGGCCGCCGGGACGGTGGACGTGATGACAGCGGCCCTCTGGTACCGCGACGGTGGC TTCAGCCGCGGGACGCTGCGATCGCTCGACCCGGACCTGCTGTTCGACGGCGCACTGCGGTATGAGAACGGCGGCTGGAC GACGTATGCCGAGCCGAGTCGTCTGAGCTGGCGCTTCCCGGGCGCGGCCGACGCCGTGCGAGTGGGGAAGGCCGCGCTTC CACCGGTGGTGACGGTGCCGAGGCACGTGCCAGTCAGGAGCATGGAGGGTCTGCTCGGCGGGTCTTTCGACCAGCTGACG GGCGGGATCGAGCCCGCGTTCATCGACTCGCTGCCGGAAGGGCCCGACGACGCGCAGCGGAGACAGTCAAAGTGGACGAT CTGCGTTGAGGCGGTCACGTCTGCTGGACGCGCCGCGTTCGGCGAGGTCGAGGGCACAGACGGGTACGGAAAGACCGCGG TGATCGCGGTGGAAGCGGCGCGCAGGCTGGTGGTGAACGGGGCCAATGCTGGTGTCCTGGCGCCGTCGCAGGCATTCGAT CCGGAATCGTTCCTGGGTTTCCTGTCGGGACACGGCGTGCGCTGGCTGGTCACCGAAGGCTGA
Upstream 100 bases:
>100_bases GGACGATCGAACATGAAGGCGGGACATCTAGACATGGATCGTCCCGCTGAGCCGGTCCTACGGTCGATCTCGACAGCGGC ATCCGAAGCTGGGAGACGAC
Downstream 100 bases:
>100_bases GCCAGGGCGACGACCAGCGCCTTTGTACTACTCCGCGAGCCGGCGACGGCTCGGGCAGACTGGAGTCGACGTGATCCCGG CGTCGGACGGGGCCAGCCCG
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MKIALNGASGFTGRLAVAELARRGIDAVLVGRDPERLRAAAAGTGFEVRIADIGDQDALRSAFGDVDAVVNTAGPFARLG APVVRAAIAAEAHYVDTTGEQQYISDVFGAFASAAADAGVTIVPAMADDGGPSDFIGHLVGEAAGTVDVMTAALWYRDGG FSRGTLRSLDPDLLFDGALRYENGGWTTYAEPSRLSWRFPGAADAVRVGKAALPPVVTVPRHVPVRSMEGLLGGSFDQLT GGIEPAFIDSLPEGPDDAQRRQSKWTICVEAVTSAGRAAFGEVEGTDGYGKTAVIAVEAARRLVVNGANAGVLAPSQAFD PESFLGFLSGHGVRWLVTEG
Sequences:
>Translated_340_residues MKIALNGASGFTGRLAVAELARRGIDAVLVGRDPERLRAAAAGTGFEVRIADIGDQDALRSAFGDVDAVVNTAGPFARLG APVVRAAIAAEAHYVDTTGEQQYISDVFGAFASAAADAGVTIVPAMADDGGPSDFIGHLVGEAAGTVDVMTAALWYRDGG FSRGTLRSLDPDLLFDGALRYENGGWTTYAEPSRLSWRFPGAADAVRVGKAALPPVVTVPRHVPVRSMEGLLGGSFDQLT GGIEPAFIDSLPEGPDDAQRRQSKWTICVEAVTSAGRAAFGEVEGTDGYGKTAVIAVEAARRLVVNGANAGVLAPSQAFD PESFLGFLSGHGVRWLVTEG >Mature_340_residues MKIALNGASGFTGRLAVAELARRGIDAVLVGRDPERLRAAAAGTGFEVRIADIGDQDALRSAFGDVDAVVNTAGPFARLG APVVRAAIAAEAHYVDTTGEQQYISDVFGAFASAAADAGVTIVPAMADDGGPSDFIGHLVGEAAGTVDVMTAALWYRDGG FSRGTLRSLDPDLLFDGALRYENGGWTTYAEPSRLSWRFPGAADAVRVGKAALPPVVTVPRHVPVRSMEGLLGGSFDQLT GGIEPAFIDSLPEGPDDAQRRQSKWTICVEAVTSAGRAAFGEVEGTDGYGKTAVIAVEAARRLVVNGANAGVLAPSQAFD PESFLGFLSGHGVRWLVTEG
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the saccharopine dehydrogenase family. Enoyl reductase subfamily [H]
Homologues:
Organism=Drosophila melanogaster, GI24644140, Length=146, Percent_Identity=33.5616438356164, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644142, Length=146, Percent_Identity=33.5616438356164, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21356081, Length=146, Percent_Identity=33.5616438356164, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24646278, Length=140, Percent_Identity=32.8571428571429, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: NA
Molecular weight: Translated: 35246; Mature: 35246
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIALNGASGFTGRLAVAELARRGIDAVLVGRDPERLRAAAAGTGFEVRIADIGDQDALR CEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCEEEEECCCCHHHHH SAFGDVDAVVNTAGPFARLGAPVVRAAIAAEAHYVDTTGEQQYISDVFGAFASAAADAGV HHHCCHHHHHHCCCCHHHHCHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHCCCCC TIVPAMADDGGPSDFIGHLVGEAAGTVDVMTAALWYRDGGFSRGTLRSLDPDLLFDGALR EEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCEEE YENGGWTTYAEPSRLSWRFPGAADAVRVGKAALPPVVTVPRHVPVRSMEGLLGGSFDQLT ECCCCEEEECCCCCCEEECCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCHHHHH GGIEPAFIDSLPEGPDDAQRRQSKWTICVEAVTSAGRAAFGEVEGTDGYGKTAVIAVEAA CCCCHHHHHCCCCCCCHHHHHHCCHHEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEEHH RRLVVNGANAGVLAPSQAFDPESFLGFLSGHGVRWLVTEG HEEEEECCCCCEECCCCCCCHHHHHHHHCCCCEEEEEECC >Mature Secondary Structure MKIALNGASGFTGRLAVAELARRGIDAVLVGRDPERLRAAAAGTGFEVRIADIGDQDALR CEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCEEEEECCCCHHHHH SAFGDVDAVVNTAGPFARLGAPVVRAAIAAEAHYVDTTGEQQYISDVFGAFASAAADAGV HHHCCHHHHHHCCCCHHHHCHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHCCCCC TIVPAMADDGGPSDFIGHLVGEAAGTVDVMTAALWYRDGGFSRGTLRSLDPDLLFDGALR EEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCEEE YENGGWTTYAEPSRLSWRFPGAADAVRVGKAALPPVVTVPRHVPVRSMEGLLGGSFDQLT ECCCCEEEECCCCCCEEECCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCHHHHH GGIEPAFIDSLPEGPDDAQRRQSKWTICVEAVTSAGRAAFGEVEGTDGYGKTAVIAVEAA CCCCHHHHHCCCCCCCHHHHHHCCHHEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEEHH RRLVVNGANAGVLAPSQAFDPESFLGFLSGHGVRWLVTEG HEEEEECCCCCEECCCCCCCHHHHHHHHCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]