| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318285
Identifier: 158318285
GI number: 158318285
Start: 7966697
End: 7967530
Strand: Reverse
Name: 158318285
Synonym: Franean1_6550
Alternate gene names: NA
Gene position: 7967530-7966697 (Counterclockwise)
Preceding gene: 158318286
Following gene: 158318284
Centisome position: 88.71
GC content: 63.55
Gene sequence:
>834_bases ATGGCTCGACCCGGACGGACTATTCGACGGCGGCAGGTGCTGCTCGGGCTGGTAGTGGCGACGCTGGCCGCAGCCGGGCT CACCGGCCGCGCCGGTTCACTGGAGCCGCCGGCAACCACTGAGTGCGACCGTCGGCCGGACGTCTCGAACACCGGCCCAG CGCCCGGGGTCCCGCTCCGGACAGCGAAGCAGAATCTCTATGTTGACGGGCAGGTATTGGAGAACAAGGAGTTCTTCGGC CCGGTTGACATCGTCGCCGACAATGTCACCATCAGGAATTCGATCGTTTACGGCGGTATCCGGCTACGCGGGAATCGCAC CATGATAGACCATGTGACGGCGACCGGGATTTCGATTCAATCCGGCACCGGCCATGTCATCCAGTACGCCAACCTGTCCG GGGGCGCGGACGGCATCCACCTCGGGTCGAACCGGCCGGTATCCGGCACCATCATCCGCAACAACTACATTCACGACCTG ATGGCGCTGTCCGGTCTACACGTCGACGGCATACAGGTCCGCGGCTCACGGAATCTGAGCGTGGTGTGCAACAATATAGA CCTGGGGCCGTACAGGCAGCGACAGAACGGTGCCATATACCTGGAATGGGTGAACGGCGGAAACCACGGCGTGGTCATCG ACCGCAACTGGCTGAATGGCGGCGGCAACACGTTGTACGTCACCGCGACGAACCTCCGGGTGACGTACAACCGATTCGGG CGGAACTTCCGCTGGGCCGTCTGCCGGCTGAATGACCGCAGGAATCCGTTTGTCAGCGCCGGAAACGTCTGGGACAACAC CGGCGGGCCGGTGAACCTGTGCGGCCAGGGCTAG
Upstream 100 bases:
>100_bases CCGGCACACCGGTAAAGCTGTGCGACCAGGAATAGGTCATGTCCGGCGGTGGGCCTCTGCTGACGCCAGTTTTTTGACCA GGCACTGCTGGGGGGATCCG
Downstream 100 bases:
>100_bases GCAGGCCTAGTGAATCCTGGTCGATGCCGAGCTGCCGCGTAGATGACAGCAATTCGAGGGGATGAGCCGCAGTGACACCG CTACTGACACCACTGGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MARPGRTIRRRQVLLGLVVATLAAAGLTGRAGSLEPPATTECDRRPDVSNTGPAPGVPLRTAKQNLYVDGQVLENKEFFG PVDIVADNVTIRNSIVYGGIRLRGNRTMIDHVTATGISIQSGTGHVIQYANLSGGADGIHLGSNRPVSGTIIRNNYIHDL MALSGLHVDGIQVRGSRNLSVVCNNIDLGPYRQRQNGAIYLEWVNGGNHGVVIDRNWLNGGGNTLYVTATNLRVTYNRFG RNFRWAVCRLNDRRNPFVSAGNVWDNTGGPVNLCGQG
Sequences:
>Translated_277_residues MARPGRTIRRRQVLLGLVVATLAAAGLTGRAGSLEPPATTECDRRPDVSNTGPAPGVPLRTAKQNLYVDGQVLENKEFFG PVDIVADNVTIRNSIVYGGIRLRGNRTMIDHVTATGISIQSGTGHVIQYANLSGGADGIHLGSNRPVSGTIIRNNYIHDL MALSGLHVDGIQVRGSRNLSVVCNNIDLGPYRQRQNGAIYLEWVNGGNHGVVIDRNWLNGGGNTLYVTATNLRVTYNRFG RNFRWAVCRLNDRRNPFVSAGNVWDNTGGPVNLCGQG >Mature_276_residues ARPGRTIRRRQVLLGLVVATLAAAGLTGRAGSLEPPATTECDRRPDVSNTGPAPGVPLRTAKQNLYVDGQVLENKEFFGP VDIVADNVTIRNSIVYGGIRLRGNRTMIDHVTATGISIQSGTGHVIQYANLSGGADGIHLGSNRPVSGTIIRNNYIHDLM ALSGLHVDGIQVRGSRNLSVVCNNIDLGPYRQRQNGAIYLEWVNGGNHGVVIDRNWLNGGGNTLYVTATNLRVTYNRFGR NFRWAVCRLNDRRNPFVSAGNVWDNTGGPVNLCGQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29906; Mature: 29775
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPGRTIRRRQVLLGLVVATLAAAGLTGRAGSLEPPATTECDRRPDVSNTGPAPGVPLR CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE TAKQNLYVDGQVLENKEFFGPVDIVADNVTIRNSIVYGGIRLRGNRTMIDHVTATGISIQ ECCCCEEECCEEECCCCCCCCCCEEECCEEEECEEEEEEEEEECCCEEEEEEEECCEEEE SGTGHVIQYANLSGGADGIHLGSNRPVSGTIIRNNYIHDLMALSGLHVDGIQVRGSRNLS CCCCCEEEEECCCCCCCEEECCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEEECCCCEE VVCNNIDLGPYRQRQNGAIYLEWVNGGNHGVVIDRNWLNGGGNTLYVTATNLRVTYNRFG EEEECCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEHHHC RNFRWAVCRLNDRRNPFVSAGNVWDNTGGPVNLCGQG CCEEEEEEEECCCCCCEEEECCCCCCCCCCEEECCCC >Mature Secondary Structure ARPGRTIRRRQVLLGLVVATLAAAGLTGRAGSLEPPATTECDRRPDVSNTGPAPGVPLR CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE TAKQNLYVDGQVLENKEFFGPVDIVADNVTIRNSIVYGGIRLRGNRTMIDHVTATGISIQ ECCCCEEECCEEECCCCCCCCCCEEECCEEEECEEEEEEEEEECCCEEEEEEEECCEEEE SGTGHVIQYANLSGGADGIHLGSNRPVSGTIIRNNYIHDLMALSGLHVDGIQVRGSRNLS CCCCCEEEEECCCCCCCEEECCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEEECCCCEE VVCNNIDLGPYRQRQNGAIYLEWVNGGNHGVVIDRNWLNGGGNTLYVTATNLRVTYNRFG EEEECCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEHHHC RNFRWAVCRLNDRRNPFVSAGNVWDNTGGPVNLCGQG CCEEEEEEEECCCCCCEEEECCCCCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA