| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318271
Identifier: 158318271
GI number: 158318271
Start: 7948087
End: 7949145
Strand: Direct
Name: 158318271
Synonym: Franean1_6536
Alternate gene names: NA
Gene position: 7948087-7949145 (Clockwise)
Preceding gene: 158318269
Following gene: 158318276
Centisome position: 88.49
GC content: 73.28
Gene sequence:
>1059_bases GTGAAGGTCGACAGCACCCTTGGCTCGCTGGACATCGCTGCCGGCCAGGCCCGCGCCGCGCAGGCCGCCGGCTACGACGC CATCTGGACCGGGGAGGTGAACCAGGACCCGTTCCTCCCGCTGACCCTCGCCGCCGACGCGACGTCCGCGATCGAGCTGG GCACCTCGATCACTGTCGCGCTGTCCCGCTCGCCGATGTCGCTGGCGTACACCGCGCACGACCTGCACGGGTTCTCCGGC GGCCGGCTCCGGCTCGGCCTCGGCTCGCAGGTGAAGGCGCACATCACCCGCCGTTTCTCGATGCCGTGGGGCCGGCCCGC GCCACAGCTGCGCGAGTTCGTCCTGGCGCTGCGCGCGATCTGGTCGTCCTGGTCGGAGGGCACCCCGCTCGCCTTCGAGG GCGAGTACTACCGGCACACGTTGATGCCGCCGGCGTTCGTCCCGAAGCCGCACCCTTTCGGGCCACCCCAGGTGCTCCTC GCCGGCGTCGGGGACGTCATGACCCGGGTCGCGGGCGAGGTCGCCGACGGATTCCTGTGCCACTGGTTCACCAGCCCGCG CTGGATCCGCGAGCACACCGTTCCCGCGCTGCTGGCGGGCCGGCAGCGCGCGGGCCGCACGCTGGACGGCTTCGACATCG TCGCCGGCGGGTTCGTCGCCACCGGCACCGACCAGGAGATCACCGAAGGGCTGGCAAGGATGCGCGCCCAGATCTCCTTC TACGGGTCGACCCCGGCCTACCGCGCCGTGCTCGAGCTGCACGGCTGGGGCGATCTCGGCAGCGAGCTGACCGCGCTGTC CAAGCAGAACCGGTGGACCGAGATGGCCGCCCTGATCGACGACGACGTCGTCGAGACCTTCGGCATCGTCGCGGCGCCCG CGGACGTCCCCGCCCGCATCGCCGAGCGCCTCGGCGGCCTGGCGACCCGCACGACGTTCACGCCGCCGCCGTCGTTCGGC CCCGAGCAGACCCGGGAGATTCTGGCCGCCATCCAGGCGATCCCGACCGCGGCTCCGACCACCGGCGCGGCGGGCCGGCA CCGGACCGGACCCGCGTAA
Upstream 100 bases:
>100_bases CGCGTCGGCCCCGGCGCCGACCGTCCGTCCGCTGTTAGCTTTCAGGACATACGAGCCCCGCGGGAGGCGGCCCGCGGGGC GACGTCGAGGAGGCGGCAAC
Downstream 100 bases:
>100_bases CCAGACCCGGTCCCGGACTCCCCGCGCGGCGCGCGGCGCGCGCCGCGCGGGGAGATGCTCACTCAGACCTTGATGGGCAG CTTCTCGTAGCCGCGCACGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MKVDSTLGSLDIAAGQARAAQAAGYDAIWTGEVNQDPFLPLTLAADATSAIELGTSITVALSRSPMSLAYTAHDLHGFSG GRLRLGLGSQVKAHITRRFSMPWGRPAPQLREFVLALRAIWSSWSEGTPLAFEGEYYRHTLMPPAFVPKPHPFGPPQVLL AGVGDVMTRVAGEVADGFLCHWFTSPRWIREHTVPALLAGRQRAGRTLDGFDIVAGGFVATGTDQEITEGLARMRAQISF YGSTPAYRAVLELHGWGDLGSELTALSKQNRWTEMAALIDDDVVETFGIVAAPADVPARIAERLGGLATRTTFTPPPSFG PEQTREILAAIQAIPTAAPTTGAAGRHRTGPA
Sequences:
>Translated_352_residues MKVDSTLGSLDIAAGQARAAQAAGYDAIWTGEVNQDPFLPLTLAADATSAIELGTSITVALSRSPMSLAYTAHDLHGFSG GRLRLGLGSQVKAHITRRFSMPWGRPAPQLREFVLALRAIWSSWSEGTPLAFEGEYYRHTLMPPAFVPKPHPFGPPQVLL AGVGDVMTRVAGEVADGFLCHWFTSPRWIREHTVPALLAGRQRAGRTLDGFDIVAGGFVATGTDQEITEGLARMRAQISF YGSTPAYRAVLELHGWGDLGSELTALSKQNRWTEMAALIDDDVVETFGIVAAPADVPARIAERLGGLATRTTFTPPPSFG PEQTREILAAIQAIPTAAPTTGAAGRHRTGPA >Mature_352_residues MKVDSTLGSLDIAAGQARAAQAAGYDAIWTGEVNQDPFLPLTLAADATSAIELGTSITVALSRSPMSLAYTAHDLHGFSG GRLRLGLGSQVKAHITRRFSMPWGRPAPQLREFVLALRAIWSSWSEGTPLAFEGEYYRHTLMPPAFVPKPHPFGPPQVLL AGVGDVMTRVAGEVADGFLCHWFTSPRWIREHTVPALLAGRQRAGRTLDGFDIVAGGFVATGTDQEITEGLARMRAQISF YGSTPAYRAVLELHGWGDLGSELTALSKQNRWTEMAALIDDDVVETFGIVAAPADVPARIAERLGGLATRTTFTPPPSFG PEQTREILAAIQAIPTAAPTTGAAGRHRTGPA
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019919 - InterPro: IPR011251 - InterPro: IPR016048 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 37575; Mature: 37575
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVDSTLGSLDIAAGQARAAQAAGYDAIWTGEVNQDPFLPLTLAADATSAIELGTSITVA CCCCCCCCCEEECCCCHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCHHHHCCCEEEEE LSRSPMSLAYTAHDLHGFSGGRLRLGLGSQVKAHITRRFSMPWGRPAPQLREFVLALRAI EECCCCEEEEEHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH WSSWSEGTPLAFEGEYYRHTLMPPAFVPKPHPFGPPQVLLAGVGDVMTRVAGEVADGFLC HHCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE HWFTSPRWIREHTVPALLAGRQRAGRTLDGFDIVAGGFVATGTDQEITEGLARMRAQISF EECCCCHHHHHHCHHHHHHCHHHCCCCCCCCCEEECCEEECCCCHHHHHHHHHHHHHEEE YGSTPAYRAVLELHGWGDLGSELTALSKQNRWTEMAALIDDDVVETFGIVAAPADVPARI ECCCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCHHHH AERLGGLATRTTFTPPPSFGPEQTREILAAIQAIPTAAPTTGAAGRHRTGPA HHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKVDSTLGSLDIAAGQARAAQAAGYDAIWTGEVNQDPFLPLTLAADATSAIELGTSITVA CCCCCCCCCEEECCCCHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCHHHHCCCEEEEE LSRSPMSLAYTAHDLHGFSGGRLRLGLGSQVKAHITRRFSMPWGRPAPQLREFVLALRAI EECCCCEEEEEHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH WSSWSEGTPLAFEGEYYRHTLMPPAFVPKPHPFGPPQVLLAGVGDVMTRVAGEVADGFLC HHCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE HWFTSPRWIREHTVPALLAGRQRAGRTLDGFDIVAGGFVATGTDQEITEGLARMRAQISF EECCCCHHHHHHCHHHHHHCHHHCCCCCCCCCEEECCEEECCCCHHHHHHHHHHHHHEEE YGSTPAYRAVLELHGWGDLGSELTALSKQNRWTEMAALIDDDVVETFGIVAAPADVPARI ECCCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCHHHH AERLGGLATRTTFTPPPSFGPEQTREILAAIQAIPTAAPTTGAAGRHRTGPA HHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]